View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_2 (Length: 404)
Name: NF19798_low_2
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 53 - 388
Target Start/End: Complemental strand, 32640222 - 32639884
Alignment:
| Q |
53 |
tttataagcttgattaatttataaactaattatcactaattagaaaaatattactgttaatattagaaagttaaatgttaaagactaatttgannnnnnn |
152 |
Q |
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| T |
32640222 |
tttataagcttgattaatttataaactaattatcactaattagaaaaatattactgttaatattagaaaggtaaatgttaaagactaatttgattttttt |
32640123 |
T |
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| Q |
153 |
agtataattttcacatgcaattcaattttttagtgaataat---gaagtcatatcctagaattgtttgttgatcttcatggataattttgatgttgataa |
249 |
Q |
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| T |
32640122 |
agtataattttcacatgcaattcaattttttagtgaataataatgaagtcatatcctagaattgtttgttgatcttcatggataattttgatgttgataa |
32640023 |
T |
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| Q |
250 |
tcacttagatttggaacttttcatatagaattgtccctacaaaagcacatttttgaaattatgagattgaaattcttttattcgatcctttgtgaattag |
349 |
Q |
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| T |
32640022 |
tcacttagatttggaacttttcatatagaattgtccctacaaaagcacatttttgaaattatgagattgaaattcttttattcgatcctttgtgaattag |
32639923 |
T |
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| Q |
350 |
tcactttaggaactaattcttcaggctaggtggagtttt |
388 |
Q |
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| T |
32639922 |
tcactttaggaactaattcttcaggctaggtggagtttt |
32639884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 32640290 - 32640243
Alignment:
| Q |
8 |
agcataggcccaggacaagcttttcaaagatggtacaatacctaattt |
55 |
Q |
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| T |
32640290 |
agcattggcccaggacaagcttttcaaagatggtacaataactaattt |
32640243 |
T |
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