View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_3 (Length: 398)
Name: NF19798_low_3
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 5 - 376
Target Start/End: Original strand, 6963141 - 6963526
Alignment:
| Q |
5 |
tcaactggttatgacaatgcagttgcattgcctgctggtggaagaggcgatgaggaagaacttggtaaggaaaataacaagagtgctgcatcatctaaag |
104 |
Q |
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| T |
6963141 |
tcaactggttatgacaatgcagttgcattgcctgctggtggaagaggcgatgaggaagaacttggtaaggaaaataacaagagtgctgcatcatctaaag |
6963240 |
T |
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| Q |
105 |
ggaaaattacattgagtgtaactcagagtaagcctgaaactggtgaggttattggtgtgtttgaaagtattcagccttctgatactgatttaggtgctaa |
204 |
Q |
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| T |
6963241 |
ggaaaattacattgagtgtaactcagagtaagcctgaaactggtgaggttattggtgtgtttgaaagtattcagccttctgatactgatttaggtgctaa |
6963340 |
T |
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| Q |
205 |
agctcctaaggatgttaagattcaaggtgtttggtatgctcaacttgagtcatagaacatttctgttggtttcgattttgttagcaaaatcttttgacac |
304 |
Q |
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| T |
6963341 |
agctcctaaggatgttaagattcaaggtgtttggtatgctcagcttgagtcatagaacatttctgatggtttagattttgttagcaaaatcttttgacac |
6963440 |
T |
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| Q |
305 |
caattggttaagagca--------------catcatgtttgtatattataatgacttgatcataatgcttaaaatgtcacgtggtc |
376 |
Q |
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| T |
6963441 |
caattggttaagagcattgagagcaattagtatcatgtttgtatattataatgacttgatcataatgcttaaaatgtcacatggtc |
6963526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 33606163 - 33605914
Alignment:
| Q |
11 |
ggttatgacaatgcagttgcattgcctgctggtggaagaggcgatgaggaagaacttggtaaggaaaataacaagagtgctgcatcatctaaagggaaaa |
110 |
Q |
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| T |
33606163 |
ggttatgacaatgcagttgcattgccagctggaggaagaggagatgaagaagaacttggaaaggaaaacaacaagagtgctgcatcatctaaggggaaaa |
33606064 |
T |
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| Q |
111 |
ttacattgagtgtaactcagagtaagcctgaaactggtgaggttattggtgtgtttgaaagtattcagccttctgatactgatttaggtgctaaagctcc |
210 |
Q |
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| T |
33606063 |
tcacattgagtgttactcaaactaagcctgagactggtgaagttattggtgtgtttgagagtattcagccgtctgacactgatttgggtgctaaagcacc |
33605964 |
T |
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| Q |
211 |
taaggatgttaagattcaaggtgtttggtatgctcaacttgagtcataga |
260 |
Q |
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| T |
33605963 |
aaaggatgttaaaatccaaggtgtttggtatgctcagcttgagtcataga |
33605914 |
T |
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