View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_4 (Length: 348)
Name: NF19798_low_4
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 333
Target Start/End: Original strand, 34690634 - 34690953
Alignment:
| Q |
14 |
caatttttggcaagagaagaaaaccatgttaaagacaatgacttatccctgtcttctctggcatcaaggtcagaacaccaagtaagaaaagggtagattc |
113 |
Q |
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| T |
34690634 |
caatttttggcaagagaagaaaaccatgttaaagacaatgacttatccctgtcttctctggcatcaaggtcagaacaccaagaaagaaaagggtagattc |
34690733 |
T |
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| Q |
114 |
tcatgttctagctagttgaaacagagagccagtaggcaatagtattggctcaaataataagcaaaaccattgataataaataacagatataattaaattg |
213 |
Q |
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| T |
34690734 |
tcatgtcctagctagttgaaacagagagccagtaggcaatagtattggctcaaataataagcaaaaccattgataataaataacagatataattaaattg |
34690833 |
T |
|
| Q |
214 |
acaattttagtctccttaaaattaactacatgtctagattgacgatgaaatagcgaaatcacgacaccacgattttgacaaaaactatattttagagctt |
313 |
Q |
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| T |
34690834 |
acaattttagtcaccttaaaattaactgcatgtctagattgacgatgaaatagcgaaatcacgccaccacgattttgagaaaaactatattttagagctt |
34690933 |
T |
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| Q |
314 |
ttacaaaatcttggtattag |
333 |
Q |
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| T |
34690934 |
ttacaaaatcttggtattag |
34690953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 3675628 - 3675667
Alignment:
| Q |
284 |
gattttgacaaaaactatattttagagcttttacaaaatc |
323 |
Q |
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| T |
3675628 |
gattttgacaaaaactatactttagagctttaacaaaatc |
3675667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 323
Target Start/End: Original strand, 27858184 - 27858229
Alignment:
| Q |
278 |
caccacgattttgacaaaaactatattttagagcttttacaaaatc |
323 |
Q |
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| T |
27858184 |
caccacgattttgacaaaagctacattttagagctttatcaaaatc |
27858229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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