View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_6 (Length: 308)
Name: NF19798_low_6
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 5018868 - 5019151
Alignment:
| Q |
19 |
cttatcgctctgatttattgtcattctgtttacacaggtatattttaattttcgacctaagtcttttgtttctctcatttttgcaggaaactttattttg |
118 |
Q |
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| T |
5018868 |
cttatcgctctgatttattgtcattctgtttacacaagtatattttaattttcgacctaagtcttttgtttctatcatttttgcaggaaactttattttg |
5018967 |
T |
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| Q |
119 |
aagtctggtgtttggacttttgtaaagccatgtaattgagctagctgtgttaagtgatgctggcatgatcattagagcagcattgtttttgtgataaata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5018968 |
aagtctggtgtttggacttttgtaaagccatgtaattgagctagctgtgttaagtgatgctggcatgatcattagagcagcattgtttttgtgataaata |
5019067 |
T |
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| Q |
219 |
tttgagcatatgatcnnnnnnnataccaacttgtttggatattgttatttgtctaatttgaacctttttggatatgatgatgtc |
302 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5019068 |
tttgagcatatgatctttttttataccaacttgtttggatattgttatttgtctaatttgaacctttttggatatgaagatgtc |
5019151 |
T |
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