View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_7 (Length: 295)
Name: NF19798_low_7
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 39568388 - 39568107
Alignment:
| Q |
1 |
ggtgtccctcaataagaaatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaag |
100 |
Q |
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| T |
39568388 |
ggtgtcactcaataagaaatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaactgattaag |
39568289 |
T |
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| Q |
101 |
ccattcaataattcagaaaagtacatgaaaacaacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttct |
200 |
Q |
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| T |
39568288 |
ccattcaataattcagaaaagtacatgaaaacgacataatctttaagcctctaagaacaactttgtttgttatgaggaaaaaatttagaaacaaatttct |
39568189 |
T |
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| Q |
201 |
gatgaggtcaataggttgcataaccatggagtgccaaaaaatgagaaaccagttagaccttgatgctggagttgctatatttt |
283 |
Q |
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| T |
39568188 |
gatgaggtcaataggttgcataaccatgg-gtgcagaaaaatgagaaaccagttagaccttgatgctggagttgctatatttt |
39568107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 39565640 - 39565366
Alignment:
| Q |
18 |
aatttaatgattaccaaacatcggcttaataagaaatttaaatcacatcttccgtatatcttatttcgtaagaact-------gattaagccattcaata |
110 |
Q |
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| T |
39565640 |
aatttaatgattaccaaa-atcagcttaataagaaatttaagtcacatcttctgtatgtcttattttgtaagaactaagaactgattaagccattcaata |
39565542 |
T |
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| Q |
111 |
attcagaaaagtacatgaaaacaacataatctttaagcctctaagaacaactttgtttgttat--gaggaaaaaatttagaaacaaatttctgatgaggt |
208 |
Q |
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| T |
39565541 |
attcagaaaaatacttgaaaacaacatagtttgtaaccatctgagaa-aacctagtttgttataaggggaaaaaaaatagaaatgaatttctgaagaggt |
39565443 |
T |
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| Q |
209 |
caataggttgcataaccatggagtgccaaaaaatgagaaaccagttagaccttgatgctggagttgctatattttct |
285 |
Q |
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| T |
39565442 |
aaataggttgcattaccaggaagtgccaaaaaatgagaaaccggttagatcttgatccttaagttgctatattttct |
39565366 |
T |
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