View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_8 (Length: 282)
Name: NF19798_low_8
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 8137423 - 8137174
Alignment:
| Q |
19 |
aaatatactatgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgact |
118 |
Q |
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| T |
8137423 |
aaatatactatgtgatggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgact |
8137324 |
T |
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| Q |
119 |
tggttctactttttt-ggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctgaa |
217 |
Q |
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| T |
8137323 |
tggttctactttttttggttcagttccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaaggacctatagctcccatggctgca |
8137224 |
T |
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| Q |
218 |
aattgtgatgtctaaagatgaagtagtgacatctatataaatgcaagaaa |
267 |
Q |
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| T |
8137223 |
aattgtgatgtctaaagatgaagtagtgacatctatataaatgcaagaaa |
8137174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 8162067 - 8161883
Alignment:
| Q |
35 |
ggtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatga---agcatattgacttggttctac-ttt |
130 |
Q |
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| T |
8162067 |
ggtatgaacctggtaagcagaagaaccgattccaaagagaaaatcagaaggaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgt |
8161968 |
T |
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| Q |
131 |
tttggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctg |
215 |
Q |
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| T |
8161967 |
tgtgatgcagttccagtgacaacagccaaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctg |
8161883 |
T |
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