View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19798_low_9 (Length: 280)
Name: NF19798_low_9
Description: NF19798
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19798_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 41837308 - 41837145
Alignment:
| Q |
87 |
actatttaatagtgcataacattatgtgtccgtctatgtttaatgaataccatacgtgtctacaataacaactagtatatataagaagctagccgcaaaa |
186 |
Q |
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| T |
41837308 |
actatttaatagtgcataacatcatgtgtccgtctatgttgaatgaataccatacgtgtctacaataacaactagtatatataagaagctaaccgcaaaa |
41837209 |
T |
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| Q |
187 |
aaggaatcattaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct |
250 |
Q |
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| T |
41837208 |
aaggaatcatcaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct |
41837145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 41831506 - 41831359
Alignment:
| Q |
15 |
ggatgaaatttaacttgtcatcttcgcaacgacaacgctcacccgttttcagatcgtcactcctacgatatgactatttaatagtgcataacattatgtg |
114 |
Q |
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| T |
41831506 |
ggatggaatttaacttgtcatctccgcaacgacaacgctcacccgttttcagatcgtcactcctacgatatgactatttaatagtgcataacattatgtg |
41831407 |
T |
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| Q |
115 |
tccgtctatgtttaatgaataccatacgtgtctacaataacaactagt |
162 |
Q |
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| T |
41831406 |
tccgtctatgttgaatgaataccatacgtgtctacaataacaactagt |
41831359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 11650319 - 11650156
Alignment:
| Q |
87 |
actatttaatagtgcataacattatgtgtccgtctatgtttaatgaataccatacgtgtctacaataacaactagtatatataagaagctagccgcaaaa |
186 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11650319 |
actatttaatagtgcataacatcatgtgtccgtctatgttgaatgaataccatacgtgtctacaataacaactagtatatataagaagctaaccgcaaaa |
11650220 |
T |
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| Q |
187 |
aaggaatcattaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct |
250 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11650219 |
aaggaatcatcaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagct |
11650156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 26059930 - 26060030
Alignment:
| Q |
162 |
tatatataagaagctagccgcaaaaaaggaatcattaggctttggcacatcacggtttgggagatccaaaagttgaggagaaagaagctacggactgcac |
261 |
Q |
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|||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26059930 |
tatataaaagaagctagccgcaaaaaaggaatcatcggactttggcacatcacggtttgggagatccaaaagttgaggagaaagaagctacggactgcac |
26060029 |
T |
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| Q |
262 |
a |
262 |
Q |
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| |
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| T |
26060030 |
a |
26060030 |
T |
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