View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19799_high_7 (Length: 365)

Name: NF19799_high_7
Description: NF19799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19799_high_7
NF19799_high_7
[»] chr7 (12 HSPs)
chr7 (1-286)||(11060093-11060378)
chr7 (1-175)||(11074073-11074248)
chr7 (1-193)||(11040188-11040380)
chr7 (115-175)||(7847583-7847643)
chr7 (72-120)||(9649901-9649949)
chr7 (72-108)||(10499068-10499104)
chr7 (72-108)||(10504097-10504133)
chr7 (60-108)||(18330318-18330366)
chr7 (43-98)||(18324386-18324441)
chr7 (49-108)||(27257337-27257396)
chr7 (72-105)||(13343368-13343401)
chr7 (72-120)||(23866827-23866876)
[»] chr5 (12 HSPs)
chr5 (31-98)||(13789086-13789153)
chr5 (195-242)||(19986880-19986927)
chr5 (72-150)||(41997718-41997796)
chr5 (72-150)||(42002509-42002587)
chr5 (72-149)||(32460485-32460562)
chr5 (49-108)||(21322954-21323013)
chr5 (49-108)||(31732668-31732727)
chr5 (54-108)||(13300408-13300462)
chr5 (72-149)||(557773-557849)
chr5 (72-108)||(562584-562619)
chr5 (195-239)||(3959690-3959734)
chr5 (72-108)||(12044072-12044108)
[»] chr4 (6 HSPs)
chr4 (49-108)||(36209154-36209213)
chr4 (72-120)||(13520926-13520974)
chr4 (49-121)||(1150281-1150353)
chr4 (195-251)||(35603204-35603260)
chr4 (49-108)||(7899871-7899930)
chr4 (72-109)||(31297466-31297502)
[»] scaffold0131 (1 HSPs)
scaffold0131 (71-117)||(8661-8707)
[»] chr2 (5 HSPs)
chr2 (49-149)||(10159636-10159734)
chr2 (195-234)||(38564617-38564656)
chr2 (72-109)||(30659273-30659310)
chr2 (79-150)||(35602674-35602745)
chr2 (49-107)||(6296829-6296887)
[»] chr6 (2 HSPs)
chr6 (195-239)||(11589357-11589401)
chr6 (195-251)||(11308260-11308317)
[»] chr1 (10 HSPs)
chr1 (195-251)||(5494133-5494189)
chr1 (195-251)||(38832831-38832887)
chr1 (195-251)||(10765748-10765805)
chr1 (74-108)||(14204508-14204542)
chr1 (72-149)||(3095166-3095242)
chr1 (195-224)||(3346057-3346086)
chr1 (195-224)||(3346701-3346730)
chr1 (67-115)||(17213081-17213129)
chr1 (65-121)||(23254139-23254195)
chr1 (49-108)||(27307391-27307448)
[»] chr8 (6 HSPs)
chr8 (72-149)||(31448805-31448882)
chr8 (72-108)||(43301684-43301720)
chr8 (195-234)||(38214638-38214677)
chr8 (72-149)||(4237282-4237358)
chr8 (72-149)||(4242021-4242097)
chr8 (43-98)||(42157235-42157288)
[»] chr3 (9 HSPs)
chr3 (195-251)||(43020020-43020077)
chr3 (72-120)||(35455824-35455872)
chr3 (49-100)||(20496192-20496243)
chr3 (72-149)||(3673643-3673719)
chr3 (72-149)||(8884247-8884324)
chr3 (72-149)||(8888993-8889070)
chr3 (195-240)||(36656899-36656944)
chr3 (195-251)||(37521841-37521898)
chr3 (72-108)||(3034762-3034797)
[»] scaffold0041 (1 HSPs)
scaffold0041 (49-108)||(34638-34697)
[»] scaffold0182 (1 HSPs)
scaffold0182 (72-106)||(8822-8856)
[»] scaffold0010 (1 HSPs)
scaffold0010 (195-225)||(157332-157362)
[»] scaffold0060 (1 HSPs)
scaffold0060 (72-108)||(46913-46949)
[»] scaffold0045 (1 HSPs)
scaffold0045 (72-108)||(84026-84062)


Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 11060378 - 11060093
Alignment:
Q  1 taattcagcttgttgtaacacagtagtagaaattgaaagttggaaaaataaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaata 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11060378 taattcagcttgttgtaacacaatagtagaaattgaaagttggaaaaataaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaata 11060279  T
Q  101 gtggaagtttcacattggatataacagtcatattaatggtgtttatatatgaggggattcattcccaatgggtgcttttggggtatccactttcgctaac 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11060278 gtggaagtttcacattggatataacattcatattaatggtgtttatatatgaggggattcattcccaatgggtgcttttggggtatccactttcgctaac 11060179  T
Q  201 ttactccttcatgtttttaggtggaagaaagttaacaacccctatatatatcacgcgcaacgacgtcaaacagatatgtttcttat 286  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11060178 ttactccttcatgtttttaggtggaagaaagctaacaacccctatatatattacgcgcaacgacgtcaaacagatatgtttcttat 11060093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 11074248 - 11074073
Alignment:
Q  1 taattcagcttgttgtaacacagtagtagaaattgaaagttggaaaaataaatacaaagtc---ccacattagatagaactagtgttgtgtgaattgaaa 97  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||| |||||| ||||||||   | ||||||||| ||||||||||||||||||||||||    
T  11074248 taattcatcttgttgtaacacaatagtagaaattggaagttggaagaataaacacaaagtcctactacattagatggaactagtgttgtgtgaattgaaa 11074149  T
Q  98 atagtggaagtttcacattggatataacagtcatattaatggtgtttatatatgaggggattcattcccaatgggtgc 175  Q
    | |||| || || || |||||||| ||||  ||||||||| || ||||||||||||||||||||||||||||||||||    
T  11074148 aaagtgaaaattccatattggatagaaca--catattaattgtatttatatatgaggggattcattcccaatgggtgc 11074073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 11040188 - 11040380
Alignment:
Q  1 taattcagcttgttgtaacacagtagtagaaattgaaagttggaaaaataaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaata 100  Q
    ||||||| |||||||||||||| |||||||||||  ||||| ||| |||||| ||||||| ||||||||||| || || ||||||||||||||||||| |    
T  11040188 taattcaacttgttgtaacacaatagtagaaatttgaagtttgaataataaacacaaagttccacattagatggagctcgtgttgtgtgaattgaaaaaa 11040287  T
Q  101 gtggaagtttcacattggatataacagtcatattaatggtgtttatatatgaggggattcattcccaatgggtgcttttggggtatccacttt 193  Q
    ||| |||| ||| ||| |||  ||||  ||||||||| ||||||||||||||||||||||||||||||||  |||  |||| |||||||||||    
T  11040288 gtgaaagtctcatattagatggaacacacatattaatagtgtttatatatgaggggattcattcccaatgtatgcgcttggagtatccacttt 11040380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 175
Target Start/End: Complemental strand, 7847643 - 7847583
Alignment:
Q  115 ttggatataacagtcatattaatggtgtttatatatgaggggattcattcccaatgggtgc 175  Q
    ||||||| ||||  |||||||||  ||||||||||||||||||||||||||||||||||||    
T  7847643 ttggatagaacacccatattaattttgtttatatatgaggggattcattcccaatgggtgc 7847583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 9649901 - 9649949
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggat 120  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  9649901 tagaactagtgttgtgtgaattgaaaaaagtggaagttccacatcggat 9649949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 10499068 - 10499104
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10499068 tagaactagtgttgtgtgaattgaaaaaagtggaagt 10499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 10504097 - 10504133
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||||||||    
T  10504097 tagaactagtgttgtgtgaattgaaaaaagtggaagt 10504133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Original strand, 18330318 - 18330366
Alignment:
Q  60 tcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||| | ||||| ||||||||||||||||||||| |||||||||    
T  18330318 tcccacatttggtagaattagtgttgtgtgaattgaaaaaagtggaagt 18330366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 18324386 - 18324441
Alignment:
Q  43 gaaaaataaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaa 98  Q
    ||||| |||| ||||| ||||||||| | ||||||||||||||||| |||||||||    
T  18324386 gaaaagtaaacacaaaatcccacatttggtagaactagtgttgtgtaaattgaaaa 18324441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 27257396 - 27257337
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||| ||||||| | | |||||||||||| |||||||||||||| |||||||||    
T  27257396 taaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagt 27257337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 105
Target Start/End: Original strand, 13343368 - 13343401
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtgga 105  Q
    ||||||||||||||||||||||||||| ||||||    
T  13343368 tagaactagtgttgtgtgaattgaaaaaagtgga 13343401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 23866876 - 23866827
Alignment:
Q  72 tagaactagtgttgtgtgaattg-aaaatagtggaagtttcacattggat 120  Q
    ||||||||||||||||||||||| |||| |||||||||  ||||||||||    
T  23866876 tagaactagtgttgtgtgaattgaaaaaaagtggaagtcccacattggat 23866827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 98
Target Start/End: Complemental strand, 13789153 - 13789086
Alignment:
Q  31 aattgaaagttggaaaaataaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaa 98  Q
    |||||||||||| || | |||| ||||||||||||||| |||| ||||| ||||||||||||||||||    
T  13789153 aattgaaagttgaaagagtaaaaacaaagtcccacattggatacaactattgttgtgtgaattgaaaa 13789086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 19986880 - 19986927
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccc 242  Q
    |||||||||||||||||||||||||||||| || |||||| |||||||    
T  19986880 gctaacttactccttcatgtttttaggtgggagtaagttagcaacccc 19986927  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 41997796 - 41997718
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatatat 150  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | ||||||||||||    
T  41997796 tagaactagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatatat 41997718  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 42002587 - 42002509
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatatat 150  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | ||||||||||||    
T  42002587 tagaactagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatatat 42002509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 32460485 - 32460562
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  32460485 tagaactagtgttgtgtgaattgaaaaaagtggaagtaccacatcggatggaacacacacattagtagtgtttatata 32460562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 21322954 - 21323013
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||| ||||||| | | |||||||||||| |||||||||||||| |||||||||    
T  21322954 taaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagt 21323013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 31732727 - 31732668
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||| ||||||| | |||||||||||||| |||||||||||||| | |||||||    
T  31732727 taaacacaaattcccacaatggatagaactagtgtagtgtgaattgaaaaaaatggaagt 31732668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 13300408 - 13300462
Alignment:
Q  54 acaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||| ||||||| | | |||||||||||| |||||||||||||| |||||||||    
T  13300408 acaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagt 13300462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 557849 - 557773
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  557849 tagaactagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatata 557773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 562619 - 562584
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||||||||    
T  562619 tagaactagtgttgtgtgaattgaaaa-agtggaagt 562584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 3959690 - 3959734
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaac 239  Q
    |||||||||||||||||||||||| ||||| || |||||| ||||    
T  3959690 gctaacttactccttcatgttttttggtgggagtaagttagcaac 3959734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 12044072 - 12044108
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  12044072 tagaactagtgttgtgtgaattgaaaaaagtgaaagt 12044108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 36209154 - 36209213
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||||||||||||  |||| |||||||||||||||||||||||| |||||||||    
T  36209154 taaacacaaagtcccacataggatataactagtgttgtgtgaattgaaaaaagtggaagt 36209213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 13520926 - 13520974
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggat 120  Q
    ||||||||||||||||||||||||||| |||||||||| ||||| ||||    
T  13520926 tagaactagtgttgtgtgaattgaaaaaagtggaagttccacatcggat 13520974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 1150281 - 1150353
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggata 121  Q
    |||| |||| ||| |||||||||||||| |||||||||||||||  |||| | ||||||||||| || |||||    
T  1150281 taaacacaatgtctcacattagatagaattagtgttgtgtgaataaaaaaaaatggaagtttcatataggata 1150353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 35603204 - 35603260
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccctatatatat 251  Q
    |||||||||||||||||||||||| ||||| || |||||| ||| ||| ||||||||    
T  35603204 gctaacttactccttcatgtttttgggtgggagtaagttagcaaaccccatatatat 35603260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 7899871 - 7899930
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||| ||||||| | | |||||||||||| |||||||||||||| |||||||||    
T  7899871 taaacacaaattcccacaatgggtagaactagtgtggtgtgaattgaaaaaagtggaagt 7899930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 31297466 - 31297502
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtt 109  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31297466 tagaactagtgttgtgtgaattgaaaa-agtggaagtt 31297502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 8707 - 8661
Alignment:
Q  71 atagaactagtgttgtgtgaattgaaaatagtggaagtttcacattg 117  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||    
T  8707 atagaactagtgttgtgtgaattgaaaaaagtggaagtctcacattg 8661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 10159636 - 10159734
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatat 148  Q
    |||| ||||| |||||  |||| ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  ||||||| | ||||||||||    
T  10159636 taaacacaaattcccatgttaggtagaactagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaaca--catattagtagtgtttatat 10159733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 234
Target Start/End: Original strand, 38564617 - 38564656
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagtta 234  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  38564617 gctaacttactccttcatgtttttaggtggaagtaagtta 38564656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 109
Target Start/End: Complemental strand, 30659310 - 30659273
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtt 109  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  30659310 tagaactagtgttgtgtgaattgaaaaaagtggaagtt 30659273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 35602745 - 35602674
Alignment:
Q  79 agtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatatat 150  Q
    |||||||||||||||||||| ||||||||| |||||| ||||  ||||  || |||| | ||||||||||||    
T  35602745 agtgttgtgtgaattgaaaaaagtggaagtctcacatcggatggaacacacacattagtagtgtttatatat 35602674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 6296829 - 6296887
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaag 107  Q
    |||| ||||| ||||||| | | |||||||||||| |||||||||||||| ||||||||    
T  6296829 taaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaag 6296887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 11589357 - 11589401
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaac 239  Q
    |||||||||||||||||||||||||||||| || |||||||||||    
T  11589357 gctaacttactccttcatgtttttaggtgggagtaagttaacaac 11589401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 11308317 - 11308260
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccc-tatatatat 251  Q
    |||||||||||||||| |||||||| |||| || |||||| ||||||| |||||||||    
T  11308317 gctaacttactccttcgtgtttttaagtgggagtaagttagcaaccccttatatatat 11308260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 5494133 - 5494189
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccctatatatat 251  Q
    |||||||||||||||||||||||| ||||| |  |||||| ||||||||||||||||    
T  5494133 gctaacttactccttcatgtttttgggtgggaataagttagcaacccctatatatat 5494189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 38832887 - 38832831
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccctatatatat 251  Q
    |||||||||||||||||||||||||||||| || |||||| || ||| |||||||||    
T  38832887 gctaacttactccttcatgtttttaggtgggagtaagttagcagcccatatatatat 38832831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 10765805 - 10765748
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccc-tatatatat 251  Q
    |||||||||||||||||||||||||||||| || |||||| || |||| |||||||||    
T  10765805 gctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 10765748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 108
Target Start/End: Original strand, 14204508 - 14204542
Alignment:
Q  74 gaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||| |||||||||    
T  14204508 gaactagtgttgtgtgaattgaaaaaagtggaagt 14204542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 3095242 - 3095166
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  3095242 tagaactagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatgaaacacacacattagtagtgtttatata 3095166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 224
Target Start/End: Complemental strand, 3346086 - 3346057
Alignment:
Q  195 gctaacttactccttcatgtttttaggtgg 224  Q
    ||||||||||||||||||||||||||||||    
T  3346086 gctaacttactccttcatgtttttaggtgg 3346057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 224
Target Start/End: Original strand, 3346701 - 3346730
Alignment:
Q  195 gctaacttactccttcatgtttttaggtgg 224  Q
    ||||||||||||||||||||||||||||||    
T  3346701 gctaacttactccttcatgtttttaggtgg 3346730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 17213081 - 17213129
Alignment:
Q  67 ttagatagaactagtgttgtgtgaattgaaaatagtggaagtttcacat 115  Q
    |||| |||||| |||||||||||||||||||| ||| |||||| |||||    
T  17213081 ttaggtagaacaagtgttgtgtgaattgaaaaaagttgaagttccacat 17213129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 23254139 - 23254195
Alignment:
Q  65 cattagatagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggata 121  Q
    |||| |||| ||||||| |||||||||||||||| |||||||||  || ||||||||    
T  23254139 cattggataaaactagtcttgtgtgaattgaaaagagtggaagtcccaaattggata 23254195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 27307391 - 27307448
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||| ||||||||| |||||| |||||  ||||||||||||||| |||||||||    
T  27307391 taaacacaaattcccacattggatagacctagt--tgtgtgaattgaaaaaagtggaagt 27307448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 31448805 - 31448882
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  31448805 tagaactagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatata 31448882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 43301684 - 43301720
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||||||||    
T  43301684 tagaactagtgttgtgtgaattgaaaaaagtggaagt 43301720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 38214677 - 38214638
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagtta 234  Q
    |||||||||||||||||||||||| |||||||| ||||||    
T  38214677 gctaacttactccttcatgtttttgggtggaagtaagtta 38214638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 4237282 - 4237358
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  4237282 tagaactagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatata 4237358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Original strand, 4242021 - 4242097
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  4242021 tagaactagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatata 4242097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 42157235 - 42157288
Alignment:
Q  43 gaaaaataaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaa 98  Q
    ||||| |||| |||||||||||  |||||||||||||| ||| |||||||||||||    
T  42157235 gaaaagtaaacacaaagtccca--ttagatagaactagagttatgtgaattgaaaa 42157288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 43020077 - 43020020
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccc-tatatatat 251  Q
    |||||||||||||||||||||||||||||| || |||||| || |||| |||||||||    
T  43020077 gctaacttactccttcatgtttttaggtgggagtaagttagcagccccatatatatat 43020020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 35455824 - 35455872
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggat 120  Q
    ||||||||||||||||| ||||||||| ||||||||| ||| |||||||    
T  35455824 tagaactagtgttgtgtaaattgaaaaaagtggaagtctcatattggat 35455872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 20496192 - 20496243
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaata 100  Q
    |||| ||||||||||| ||||| |||||||||||| |||| |||||||||||    
T  20496192 taaacacaaagtcccatattaggtagaactagtgtggtgtaaattgaaaata 20496243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 3673719 - 3673643
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  3673719 tagaactagtgttgtgtgaattgaaaa-agtggaagtcccacatcggatggaacacacacattagtagtgtttatata 3673643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 8884324 - 8884247
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||||||||||||||||||||||||| | |||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  8884324 tagaactagtgttgtgtgaattgaaaaaaatggaagtcccacatcggatggaacacacacattagtagtgtttatata 8884247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 8889070 - 8888993
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagtttcacattggatataacagtcatattaatggtgtttatata 149  Q
    ||||| ||||||||||||||||||||| |||||||||  ||||| ||||  ||||  || |||| | |||||||||||    
T  8889070 tagaattagtgttgtgtgaattgaaaaaagtggaagtcccacatcggatggaacacacacattagtagtgtttatata 8888993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 36656899 - 36656944
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacc 240  Q
    ||||||||||| |||||||||||||||||  || ||||||||||||    
T  36656899 gctaacttacttcttcatgtttttaggtgagagtaagttaacaacc 36656944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 37521898 - 37521841
Alignment:
Q  195 gctaacttactccttcatgtttttaggtggaagaaagttaacaacccc-tatatatat 251  Q
    |||||||||||||||||||||||| ||||| || |||||| || |||| |||||||||    
T  37521898 gctaacttactccttcatgtttttgggtgggagtaagttagcagccccatatatatat 37521841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 3034797 - 3034762
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3034797 tagaactagtgttgtgtgaattgaaaa-agtggaagt 3034762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 108
Target Start/End: Original strand, 34638 - 34697
Alignment:
Q  49 taaatacaaagtcccacattagatagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||| ||||| ||||||| | | |||||||||||| |||||||||||||| |||||||||    
T  34638 taaacacaaattcccacaatgggtagaactagtgtagtgtgaattgaaaaaagtggaagt 34697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 8822 - 8856
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaa 106  Q
    ||||||||||||||||||||||||||| |||||||    
T  8822 tagaactagtgttgtgtgaattgaaaaaagtggaa 8856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 157332 - 157362
Alignment:
Q  195 gctaacttactccttcatgtttttaggtgga 225  Q
    |||||||||||||||||||||||||||||||    
T  157332 gctaacttactccttcatgtttttaggtgga 157362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 46913 - 46949
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    |||||||||||| |||||||||||||| |||||||||    
T  46913 tagaactagtgtagtgtgaattgaaaaaagtggaagt 46949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 84062 - 84026
Alignment:
Q  72 tagaactagtgttgtgtgaattgaaaatagtggaagt 108  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  84062 tagaactagtgttgtgtgaattgaaaagagtgaaagt 84026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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