View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19799_low_3 (Length: 476)
Name: NF19799_low_3
Description: NF19799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19799_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 11 - 457
Target Start/End: Original strand, 21574217 - 21574663
Alignment:
| Q |
11 |
attattcttaaaaaatttcctatagtaaacctgctaagccttggacctgccatcaggacttggtatcagctggcccaattcttctacacaagttctatca |
110 |
Q |
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| T |
21574217 |
attattcttaaaaaatttcctatagtaaacctgctaagccttggacctgccatcaggacttggtatcagctggcccaattcttctacacaagttctatca |
21574316 |
T |
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| Q |
111 |
cttagtttcaattgaatatttattttctcccagtcattatatttaaacaatttcctttttctttgaaatttaattgacccctttatccttttttcctcct |
210 |
Q |
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| T |
21574317 |
cttagtttcaattgaatatttattttctcccagtcattatatttaaacaatttcctttttctttgaaatttatttgacccctttatccttttttcctcct |
21574416 |
T |
|
| Q |
211 |
ccttatggcaaaacgatcaccatctcaaaaccccatttaatatgggaatatactatttacttgatggcctttaatacatttaactcactagctttttcct |
310 |
Q |
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| T |
21574417 |
ccttatggcacaacgatcaccatctcaaaaccccatttaatatgggaatatactatttacttgatggcctttaatacatttaactcactagctttttcct |
21574516 |
T |
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| Q |
311 |
gtattgtttcagtgttggacggctgcttctctgctaagccacaaacttgacactgaagcttccctcattcttgcaaagcagcacttgaattttgactgta |
410 |
Q |
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| T |
21574517 |
gtattgtttcagtgttggacagctgcttctctgctaagccacaaacttgacactgaagcttccctcattcttgcaaagcagcacttgaattttgactgta |
21574616 |
T |
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| Q |
411 |
ataaagatgccgttgatgaaattaatgcaatgctttgggatctgaag |
457 |
Q |
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| T |
21574617 |
ataaagatgccgttgatgaaattaatgcaatgctttgggatctgaag |
21574663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 429
Target Start/End: Original strand, 16213789 - 16213917
Alignment:
| Q |
301 |
gctttttcctgtattgtttcagtgttggacggctgcttctctgctaagccacaaacttgacactgaagcttccctcattcttgcaaagcagcacttgaat |
400 |
Q |
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|||||||| || |||||||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||| |
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| T |
16213789 |
gctttttcttggattgtttcagtgtttgactgctgcttctttgctaaagcacaaacttgacactgaagcttccctcaatcttgcaaagaagcacttgaat |
16213888 |
T |
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| Q |
401 |
tttgactgtaataaagatgccgttgatga |
429 |
Q |
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| T |
16213889 |
tttgactgtaaggaagatgcggtcgatga |
16213917 |
T |
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