View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19799_low_4 (Length: 472)

Name: NF19799_low_4
Description: NF19799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19799_low_4
NF19799_low_4
[»] chr1 (6 HSPs)
chr1 (17-411)||(25721261-25721655)
chr1 (9-82)||(33096142-33096215)
chr1 (9-82)||(35819977-35820050)
chr1 (11-65)||(26308688-26308742)
chr1 (5-64)||(7750695-7750754)
chr1 (90-142)||(35820119-35820171)
[»] chr8 (4 HSPs)
chr8 (5-77)||(30491591-30491663)
chr8 (9-77)||(18896663-18896731)
chr8 (9-77)||(11873746-11873814)
chr8 (90-138)||(18896792-18896840)
[»] chr5 (4 HSPs)
chr5 (9-81)||(17483279-17483351)
chr5 (13-82)||(5003611-5003680)
chr5 (86-135)||(16644977-16645026)
chr5 (120-152)||(15203988-15204020)
[»] chr4 (2 HSPs)
chr4 (9-76)||(39238987-39239054)
chr4 (9-77)||(8131739-8131808)
[»] chr2 (1 HSPs)
chr2 (3-64)||(43519232-43519293)
[»] chr3 (9 HSPs)
chr3 (1-77)||(11413472-11413548)
chr3 (1-65)||(21355639-21355703)
chr3 (5-77)||(23564244-23564316)
chr3 (8-77)||(52418130-52418199)
chr3 (9-77)||(36618694-36618762)
chr3 (343-407)||(34649580-34649644)
chr3 (9-63)||(3837162-3837216)
chr3 (35-77)||(30889310-30889352)
chr3 (84-134)||(52417870-52417920)
[»] chr7 (5 HSPs)
chr7 (10-77)||(40352759-40352826)
chr7 (9-84)||(2407440-2407515)
chr7 (8-83)||(34111056-34111131)
chr7 (9-65)||(41415877-41415933)
chr7 (90-133)||(41415847-41415890)
[»] chr6 (7 HSPs)
chr6 (5-80)||(24840673-24840748)
chr6 (5-77)||(1436136-1436208)
chr6 (10-62)||(11171431-11171483)
chr6 (21-82)||(8382188-8382249)
chr6 (26-77)||(2696732-2696783)
chr6 (9-77)||(2704804-2704872)
chr6 (90-135)||(6063038-6063083)
[»] scaffold0267 (1 HSPs)
scaffold0267 (9-63)||(12668-12722)
[»] scaffold0007 (3 HSPs)
scaffold0007 (9-61)||(201443-201495)
scaffold0007 (90-138)||(201306-201354)
scaffold0007 (88-140)||(201680-201732)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 411
Target Start/End: Original strand, 25721261 - 25721655
Alignment:
Q  17 caattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtccagagactaaaatcacaatattgtgatacttaaga 116  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| ||| ||||||||  | |||||||||||||  ||| |||||||||||||||     
T  25721261 caattaaacctaataaataaagtgatatgggtgtcacgtatgcattgatccagtcaaaattgattcagagactaaaattgcaagattgtgatacttaagg 25721360  T
Q  117 ggacaaaactgcaattaagcctaattataattataactatagtgttgttatcgagtgtcgtgcactcaacaacatttcttttataattatcatgtttgat 216  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||     
T  25721361 gggcaaaactgcaattaaacctaattataattataactatagtgttgttattgagtgtcgtacactcaacaacatttcttttataattatcatgtttgag 25721460  T
Q  217 gtttaaactcagatgtaagtgtttaatctagtaatatcataattgtcgttagagatggacaaagtttgatacataattaaaattgtgtgtaaattgaacc 316  Q
    |||||||||||||| ||| |||||| |||||||||||||| ||||||||||  ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  25721461 gtttaaactcagatttaattgtttagtctagtaatatcatgattgtcgttaaggatagacaaagtttgatacataactaaaattgtgtgtaaattgaacc 25721560  T
Q  317 gaactgtacttcagatcattagaaccgaactgaattgtaaggaatcaattcgaaccgaactaaatcggttcttcaaactggtgaactgtttgttt 411  Q
    ||||||   ||||  |  |||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||| || |||||||||||    
T  25721561 gaactgattttcaatttgttagaaccgaactgaattataagggatcaattcgaaccgaactgaatcggttcttcaaactgatggactgtttgttt 25721655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 33096215 - 33096142
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtcc 82  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||    
T  33096215 caaaactacaattaagtctaataaataaagtgatatgggtgccacgtatggattgacccaatcaaaattggtcc 33096142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 35819977 - 35820050
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtcc 82  Q
    ||||||||||||||||  |||||||||||||||| |||||| |||||||||||||||||| |||||||| ||||    
T  35819977 caaaactgcaattaagcgtaataaataaagtgatttgggtgccacgtatgcattgacccagtcaaaattggtcc 35820050  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 26308742 - 26308688
Alignment:
Q  11 aaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgac 65  Q
    ||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||    
T  26308742 aaactgcaattaagcataataaataaagtgatatgggtgccacgcatgcattgac 26308688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 7750695 - 7750754
Alignment:
Q  5 gggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattga 64  Q
    |||||||||||||||||||  ||||||||| ||||||||| ||||||| ||| |||||||    
T  7750695 gggtcaaaactgcaattaaacctaataaatgaagtgatataggtgtcatgtaagcattga 7750754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Original strand, 35820119 - 35820171
Alignment:
Q  90 aaaatcacaatattgtgatacttaagaggacaaaactgcaattaagcctaatt 142  Q
    |||||| ||| ||||||||||||| | || |||||||||||||||||||||||    
T  35820119 aaaatcgcaagattgtgatacttagggggccaaaactgcaattaagcctaatt 35820171  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 30491663 - 30491591
Alignment:
Q  5 gggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    ||||||||| || ||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  30491663 gggtcaaaaatgtaattaagtctaataaataaagtgatatgggtgcaacgtatgaattgacccaatcaaaatt 30491591  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 18896663 - 18896731
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||| | ||||||||    
T  18896663 caaaactgcaatcaagcctaataaataaagtgatataggtgccacgtatgcattgacctagtcaaaatt 18896731  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 11873746 - 11873814
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||| |||||||||||||||||||| |||| |||||| |||||| ||||||||| ||| ||||||    
T  11873746 caaaactgtaattaagtctaataaataaaatgatctgggtgccacgtaagcattgacctaattaaaatt 11873814  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 18896792 - 18896840
Alignment:
Q  90 aaaatcacaatattgtgatacttaagaggacaaaactgcaattaagcct 138  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  18896792 aaaatcacaagattgtgatacttaggaggccaaaactgcaattaagcct 18896840  T

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Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 17483351 - 17483279
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtc 81  Q
    ||||||||||||||| ||||||||||||| |||| |||||| |||||||||||| ||||||||||||||||||    
T  17483351 caaaactgcaattaaatctaataaataaattgatttgggtgccacgtatgcatttacccaatcaaaattagtc 17483279  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 5003680 - 5003611
Alignment:
Q  13 actgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtcc 82  Q
    |||||||||||| ||||||||||||||||||| |||| ||| |||||||||||| | |||||||| ||||    
T  5003680 actgcaattaagcctaataaataaagtgatatcggtgccacatatgcattgacctagtcaaaattggtcc 5003611  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 16645026 - 16644977
Alignment:
Q  86 gactaaaatcacaatattgtgatacttaagaggacaaaactgcaattaag 135  Q
    |||||||||| ||| ||||||||||||||| || ||||||||||||||||    
T  16645026 gactaaaatcgcaaaattgtgatacttaaggggtcaaaactgcaattaag 16644977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 15204020 - 15203988
Alignment:
Q  120 caaaactgcaattaagcctaattataattataa 152  Q
    ||||| |||||||||||||||||||||||||||    
T  15204020 caaaagtgcaattaagcctaattataattataa 15203988  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 39238987 - 39239054
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaat 76  Q
    ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  39238987 caaaattgcaattaagcctaatgaataaagtgatatgggtgtcacgtatgcattgacctaatcaaaat 39239054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 8131739 - 8131808
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatg-cattgacccaatcaaaatt 77  Q
    ||||| ||||||||   ||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8131739 caaaagtgcaattagccctattaaataaagtgatatgggtgtcacgtatgacattgacccaatcaaaatt 8131808  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 64
Target Start/End: Complemental strand, 43519293 - 43519232
Alignment:
Q  3 gagggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattga 64  Q
    |||||||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  43519293 gagggtcaaaactgcaattaaacctaataaataaagtgatttgggtgtcacgtatgcattga 43519232  T

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Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11413472 - 11413548
Alignment:
Q  1 tagagggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||  ||||||||||||||| |||||||||||||||||||||||| ||  |||||||||||||| ||||||||    
T  11413472 tagagggctaaaactgcaattaagcctaataaataaagtgatatgggtgccatatatgcattgacccattcaaaatt 11413548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 21355639 - 21355703
Alignment:
Q  1 tagagggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgac 65  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||    
T  21355639 tagagggtcaaaactgcaattaagtctaataagtaaagtgatgtgggtgccacatatgcattgac 21355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 23564316 - 23564244
Alignment:
Q  5 gggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||| || ||||||||||||||| ||||||||    
T  23564316 gggtcaaaactgcaattaagcctaataattaaaatgatatgggtgccatgtatgcattgacccagtcaaaatt 23564244  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 52418130 - 52418199
Alignment:
Q  8 tcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||| ||| ||||||| ||| ||||||||    
T  52418130 tcaaaactggaattaagccgaataaataaagtgatatgggtgtcatgtaagcattgatccagtcaaaatt 52418199  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 36618762 - 36618694
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    ||||| |||||||||  |||||||||||||||||||||||| |||||||  ||||||||| ||||||||    
T  36618762 caaaattgcaattaaacctaataaataaagtgatatgggtgccacgtatatattgacccagtcaaaatt 36618694  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 343 - 407
Target Start/End: Complemental strand, 34649644 - 34649580
Alignment:
Q  343 gaactgaattgtaaggaatcaattcgaaccgaactaaatcggttcttcaaactggtgaactgttt 407  Q
    |||| |||||||||||||| ||||||||||||||| ||    ||||||||||| |||||||||||    
T  34649644 gaaccgaattgtaaggaatgaattcgaaccgaactgaacttattcttcaaactagtgaactgttt 34649580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 3837216 - 3837162
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattg 63  Q
    |||||||||||| ||||||||||||||||||||| |  ||| ||| |||||||||    
T  3837216 caaaactgcaatcaagtctaataaataaagtgatctaagtgccacatatgcattg 3837162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 30889310 - 30889352
Alignment:
Q  35 aaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||| |||||||||||||||||||||| ||| |||||||    
T  30889310 aaagtgatttgggtgtcacgtatgcattgacacaaacaaaatt 30889352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 52417920 - 52417870
Alignment:
Q  84 gagactaaaatcacaatattgtgatacttaagaggacaaaactgcaattaa 134  Q
    ||||| ||||||||||  |||||||||||| |||| |||||||||||||||    
T  52417920 gagaccaaaatcacaaggttgtgatacttaggagggcaaaactgcaattaa 52417870  T

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Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 40352826 - 40352759
Alignment:
Q  10 aaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    ||||||||||||||| ||||||||||||||||||| |||| ||| || ||||||||||||||||||||    
T  40352826 aaaactgcaattaagcctaataaataaagtgatataggtgccacataagcattgacccaatcaaaatt 40352759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 2407515 - 2407440
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtccag 84  Q
    |||||||||||||||  ||||||||||| ||||| |||| | |||||||||||||||| | |||||||| ||||||    
T  2407515 caaaactgcaattaaacctaataaataaggtgatttgggcgccacgtatgcattgacctagtcaaaattggtccag 2407440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 34111131 - 34111056
Alignment:
Q  8 tcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtcca 83  Q
    ||||||||||||||||| ||||||||||||| ||| | ||||  || |||||||||||| | |||||||| |||||    
T  34111131 tcaaaactgcaattaagcctaataaataaagggatttaggtgctacatatgcattgacctagtcaaaattggtcca 34111056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 41415877 - 41415933
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgac 65  Q
    ||||||||||||||   |||||||| | ||||||||||||| |||||||||||||||    
T  41415877 caaaactgcaattagacctaataaacatagtgatatgggtgccacgtatgcattgac 41415933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 41415847 - 41415890
Alignment:
Q  90 aaaatcacaatattgtgatacttaagaggacaaaactgcaatta 133  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||    
T  41415847 aaaatcgcaagattgtgatacttaagaggccaaaactgcaatta 41415890  T

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Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 24840673 - 24840748
Alignment:
Q  5 gggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagt 80  Q
    |||||||||||||||| ||| ||||||||||||||||| || |||||||||| ||||||||| | |||||||||||    
T  24840673 gggtcaaaactgcaatcaagcctaataaataaagtgatttgagtgtcacgtaagcattgacctagtcaaaattagt 24840748  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 1436208 - 1436136
Alignment:
Q  5 gggtcaaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||||||||||||||  ||||||||||| |||||||||||  |||||||||||||| | ||||||||||    
T  1436208 gggtcaaaactgcaattaatcctaataaataatgtgatatgggtaccacgtatgcattgaacaaatcaaaatt 1436136  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 11171483 - 11171431
Alignment:
Q  10 aaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcatt 62  Q
    ||||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  11171483 aaaactgcaattaaacctaataaataaagtgatatgggtgtcacatatgcatt 11171431  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 8382249 - 8382188
Alignment:
Q  21 taagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaattagtcc 82  Q
    ||||| |||||||||||||||| |||||| ||| |||||||||||||| |||||||| ||||    
T  8382249 taagtttaataaataaagtgatttgggtgccacttatgcattgacccagtcaaaattggtcc 8382188  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 2696732 - 2696783
Alignment:
Q  26 ctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    |||||||||||||||||||||||||||||||| |||  ||||| ||||||||    
T  2696732 ctaataaataaagtgatatgggtgtcacgtatacatgaacccagtcaaaatt 2696783  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 2704804 - 2704872
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattgacccaatcaaaatt 77  Q
    ||||| |||||||||  | ||||||||||||||| || |||||| |||| |||||||||| ||||||||    
T  2704804 caaaattgcaattaaaccaaataaataaagtgatttgtgtgtcaagtatacattgacccagtcaaaatt 2704872  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 6063083 - 6063038
Alignment:
Q  90 aaaatcacaatattgtgatacttaagaggacaaaactgcaattaag 135  Q
    |||||||||| ||| ||||||||| |||| ||||||||||||||||    
T  6063083 aaaatcacaaaattatgatacttaggaggtcaaaactgcaattaag 6063038  T

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Target: scaffold0267 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 12722 - 12668
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcattg 63  Q
    |||||||||||||||||||||||||||||||||| | |||| |||||||||||||    
T  12722 caaaactgcaattaagtctaataaataaagtgatctaggtgccacgtatgcattg 12668  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 201495 - 201443
Alignment:
Q  9 caaaactgcaattaagtctaataaataaagtgatatgggtgtcacgtatgcat 61  Q
    ||||||||||||||||  ||||||||||||||||||||||  ||| |||||||    
T  201495 caaaactgcaattaagcataataaataaagtgatatgggtaccacctatgcat 201443  T

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Target: scaffold0007; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 201354 - 201306
Alignment:
Q  90 aaaatcacaatattgtgatacttaagaggacaaaactgcaattaagcct 138  Q
    |||||| ||| ||||||||||||| | || |||||||||||||||||||    
T  201354 aaaatcgcaagattgtgatacttagggggtcaaaactgcaattaagcct 201306  T

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Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 201680 - 201732
Alignment:
Q  88 ctaaaatcacaatattgtgatacttaagaggacaaaactgcaattaagcctaa 140  Q
    ||||||||| || ||||||||||||| | || ||||||||||||||| |||||    
T  201680 ctaaaatcataagattgtgatacttagggggccaaaactgcaattaaacctaa 201732  T

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