View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19799_low_6 (Length: 401)

Name: NF19799_low_6
Description: NF19799
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19799_low_6
NF19799_low_6
[»] chr7 (7 HSPs)
chr7 (240-401)||(11060366-11060527)
chr7 (3-191)||(43353785-43353964)
chr7 (247-401)||(11040046-11040200)
chr7 (284-401)||(11074236-11074353)
chr7 (320-395)||(11042050-11042125)
chr7 (320-387)||(11070489-11070556)
chr7 (246-310)||(7847644-7847708)
[»] chr4 (2 HSPs)
chr4 (3-190)||(1034500-1034678)
chr4 (7-91)||(19877062-19877147)
[»] chr6 (1 HSPs)
chr6 (3-239)||(748024-748257)
[»] chr1 (2 HSPs)
chr1 (3-239)||(30961192-30961425)
chr1 (253-318)||(11010171-11010236)
[»] chr2 (1 HSPs)
chr2 (101-240)||(6310200-6310337)
[»] chr3 (1 HSPs)
chr3 (101-239)||(30129760-30129896)


Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 240 - 401
Target Start/End: Complemental strand, 11060527 - 11060366
Alignment:
Q  240 aattgggcctaaattaagtgacaatccacaatacataattatttacacatagggtcaatgttggattaatgatccaacacttaaaacaaacttcggaatt 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11060527 aattgggcctaaattaagtgacaatccacaatacataattatttacacataaggtcaatgttggattaatgatccaacacttaaaacaaacttcggaatt 11060428  T
Q  340 caaataaacttgattaaatgattagttcaagtacaccgaaggagatacataattcagcttgt 401  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11060427 caaataaacttgattaaatgattagttcaagtacaccaaaggagatacataattcagcttgt 11060366  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 43353964 - 43353785
Alignment:
Q  3 ggtgggcggcggtgttgacggtggtcgtgagagaaaggcggaggtaggtggtggtgaagggagtgaagagaaagaagtaagtggatggaaatggaaaaaa 102  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||         ||||||||||||||||||||||||||||||||    
T  43353964 ggtgggcggcggtattgacggtggtcgtgagagaaaggaggaggtaggtggcggtgaag---------agaaagaagtaagtggatggaaatggaaaaaa 43353874  T
Q  103 gaaatgactgtgcagatagaagagagaaggtgaagttgaatggacaaaattacccttnnnnnnnttaattaaaaatgccacatatgggg 191  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  43353873 gaaatgactctgcagatagaagagagaagatgaagttgaatggacaaaattacccttaaaaaaattaattaaaaatgccacatatgggg 43353785  T

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Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 247 - 401
Target Start/End: Original strand, 11040046 - 11040200
Alignment:
Q  247 cctaaattaagtgacaatccacaatacataattatttacacatagggtcaatgttggattaatgatccaacacttaaaacaaacttcggaattcaaataa 346  Q
    ||||| ||||| |||||||||| ||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  11040046 cctaacttaagggacaatccaccatacataattattcacatataagggcaatgttggattaatgatccaacacttaaaacaaacttcagaattcaagtaa 11040145  T
Q  347 acttgattaaatgattagttcaagtacaccgaaggagatacataattcagcttgt 401  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||| |||||    
T  11040146 acttgattaaaagattagttcaagtacaccaaaggagatatataattcaacttgt 11040200  T

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Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 284 - 401
Target Start/End: Complemental strand, 11074353 - 11074236
Alignment:
Q  284 acacatagggtcaatgttggattaatgatccaacacttaaaacaaacttcggaattcaaataaacttgattaaatgattagttcaagtacaccgaaggag 383  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||  | |||||     
T  11074353 acacataagatcaatgttggattaatgatccaacacttaaaacaaacttcggaattcaagtaaacttgattaaaagattagttcaagtacgacaaaggat 11074254  T
Q  384 atacataattcagcttgt 401  Q
    ||| |||||||| |||||    
T  11074253 atatataattcatcttgt 11074236  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 395
Target Start/End: Original strand, 11042050 - 11042125
Alignment:
Q  320 ttaaaacaaacttcggaattcaaataaacttgattaaatgattagttcaagtacaccgaaggagatacataattca 395  Q
    ||||||||||||||  |||||||||||||| || |||| |||||| | || |||||| | ||||||||||||||||    
T  11042050 ttaaaacaaacttcataattcaaataaactagactaaaagattagatgaattacaccaatggagatacataattca 11042125  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 11070556 - 11070489
Alignment:
Q  320 ttaaaacaaacttcggaattcaaataaacttgattaaatgattagttcaagtacaccgaaggagatac 387  Q
    ||||||||| ||||  ||||||||||||||| | |||| |||||||||||||||||| | ||||||||    
T  11070556 ttaaaacaatcttcataattcaaataaacttcactaaaagattagttcaagtacaccaatggagatac 11070489  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 7847708 - 7847644
Alignment:
Q  246 gcctaaattaagtgacaatccacaatacataattatttacacatagggtcaatgttggattaatg 310  Q
    |||||| |||||| ||| |||  |||||||||||||| ||||||  | |||||||||||||||||    
T  7847708 gcctaacttaagtaacagtcccgaatacataattattcacacatgagatcaatgttggattaatg 7847644  T

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Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 3 - 190
Target Start/End: Complemental strand, 1034678 - 1034500
Alignment:
Q  3 ggtgggcggcggtgttgacggtggtcgtgagagaaaggcggaggtaggtggtggtgaagggagtgaagagaaagaagtaagtggatggaaatggaaaaaa 102  Q
    |||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  1034678 ggtgggcggcagtgttgacggtggtcgtgagagaaaggaggaggtaggtggtggtgaag---------agaaagaagtaagtggatggaaatggaaaaaa 1034588  T
Q  103 gaaatgactgtgcagatagaagagagaaggtgaagttgaatggacaaaattacccttnnnnnnnttaattaaaaatgccacatatggg 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||    
T  1034587 gaaatgactgtgcagatagaagagagaaggtgaagttgaatggacaaaattacccttaaaaaaaataattaaaaatgccacatatggg 1034500  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 19877147 - 19877062
Alignment:
Q  7 ggcggcggtgttgacggtggtcg-tgagagaaaggcggaggtaggtggtggtgaagggagtgaagagaaagaagtaagtggatgga 91  Q
    ||||| |||||| |||||||||| |||| |||||| |||||||||||||| ||||||| | ||  ||| ||| | |||||||||||    
T  19877147 ggcggtggtgttaacggtggtcggtgagtgaaaggaggaggtaggtggtgttgaagggggggagaagagagagggaagtggatgga 19877062  T

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Target: chr6 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 748024 - 748257
Alignment:
Q  3 ggtgggcggcggtgttgacggtggtcg-tgagagaaaggcggaggtaggtggtggtgaag-ggagtgaagagaaagaagtaagtggatggaaatggaaaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||||||||||| ||||||||||||||  ||        
T  748024 ggtgggcggcggtgttgacggtggtcggtgagagaaaggaggaggtaggtggtggtgaagaggggtgaagagaaagaggtaagtggatggaa--gg---- 748117  T
Q  101 aagaaatgac-tg-tgcagatagaagagagaaggtgaagttgaatggacaaaattacccttnnnnnnnttaattaaaaatgccacatatgggggtgtaca 198  Q
    ||||||| || || | |||||| |||||||||||||||   |||| |||||||||||||||       |||||||||||||||||||||  ||||||| |    
T  748118 aagaaataacgtgtttcagataaaagagagaaggtgaacgcgaattgacaaaattacccttgataaaattaattaaaaatgccacatattagggtgta-a 748216  T
Q  199 aagggggtgtgccagcttagtttgtctatgtatcagttctc 239  Q
    ||||||||  ||||||| ||| ||| |||||||||||||||    
T  748217 aagggggttggccagctaagtgtgtatatgtatcagttctc 748257  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 30961425 - 30961192
Alignment:
Q  3 ggtgggcggcggtgttgacggtggtcg-tgagagaaaggcggaggtaggtggtggtgaag-ggagtgaagagaaagaagtaagtggatggaaatggaaaa 100  Q
    ||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||| || ||||||||||| | ||||||||||||||  ||        
T  30961425 ggtgggcggcggtgttgacggtggttggtgagagaaaggaggaggtaggtggtggtgaagaggtgtgaagagaaataggtaagtggatggaa--gg---- 30961332  T
Q  101 aagaaatgac-tg-tgcagatagaagagagaaggtgaagttgaatggacaaaattacccttnnnnnnnttaattaaaaatgccacatatgggggtgtaca 198  Q
    ||||||| || || | |||||| |||||||||||||||   |||| |||||||||||||||       ||||||||||||||||||||| ||| |||| |    
T  30961331 aagaaataacgtgtttcagataaaagagagaaggtgaacgcgaattgacaaaattacccttgataaaattaattaaaaatgccacatattgggatgta-a 30961233  T
Q  199 aagggggtgtgccagcttagtttgtctatgtatcagttctc 239  Q
    ||||||||  ||||||| ||| ||| ||| |||||||||||    
T  30961232 aagggggttggccagctcagtgtgtatatatatcagttctc 30961192  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 11010236 - 11010171
Alignment:
Q  253 ttaagtgacaatccacaatacataattatttacacatagggtcaatgttggattaatgatccaaca 318  Q
    ||||||||||||| |||||||||| ||||| | | |||  ||||| ||||||||||||||||||||    
T  11010236 ttaagtgacaatcaacaatacatagttattcatatataatgtcaacgttggattaatgatccaaca 11010171  T

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Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 101 - 240
Target Start/End: Original strand, 6310200 - 6310337
Alignment:
Q  101 aagaaatgactgtgcagatagaagagagaaggtgaagttgaatggacaaaattacccttnnnnnnnttaattaaaaatgccacatatgggggtgtacaaa 200  Q
    |||||||||| || ||||||||||||||||||||||| || || |||||||||||||||       ||||||||||||||||||||| ||||||||||||    
T  6310200 aagaaatgac-gttcagatagaagagagaaggtgaaggtggattgacaaaattacccttaataaaattaattaaaaatgccacatat-ggggtgtacaaa 6310297  T
Q  201 gggggtgtgccagcttagtttgtctatgtatcagttctca 240  Q
    |||||| |||||||| ||| | | | ||||||||||||||    
T  6310298 gggggtttgccagctaagtgtatatgtgtatcagttctca 6310337  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 30129760 - 30129896
Alignment:
Q  101 aagaaatgactgtgcagatagaagagagaaggtgaagttgaatggacaaaattacccttnnnnnnnttaattaaaaatgccacatatgggggtgtacaaa 200  Q
    |||||||||| || |||||||||||||||| |||||| || || |||||||||||||||       ||||||||||||||||||||| ||||||||||||    
T  30129760 aagaaatgac-gttcagatagaagagagaaagtgaaggtggattgacaaaattacccttaataaaattaattaaaaatgccacatat-ggggtgtacaaa 30129857  T
Q  201 gggggtgtgccagcttagtttgtctatgtatcagttctc 239  Q
    |||| | || ||||| | | ||| | |||||||||||||    
T  30129858 ggggatttgtcagctaaatgtgtatgtgtatcagttctc 30129896  T

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