View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1979_high_1 (Length: 516)
Name: NF1979_high_1
Description: NF1979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1979_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 498
Target Start/End: Original strand, 37816459 - 37816941
Alignment:
| Q |
16 |
aggcaccaagcattataaaatgtattcctcccgcattgaaagaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaact |
115 |
Q |
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||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37816459 |
aggcaccgagcattataaaatgtattcctcctgcattgaaagaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaact |
37816558 |
T |
|
| Q |
116 |
ataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattcccttccactaccattattgggacactagcaatcagaggttccatgtacctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37816559 |
ataagcaacgaatgtcttgttttcagcttgttcttctatctcatgattcccttccactaccattattgggacactagcaatcagaggttccatgtacctg |
37816658 |
T |
|
| Q |
216 |
aatcaataattcacattgattcgattgagccaataaatctcaaaatcaaaatcaaaacaatgacaagactagcaccatgtgcctaaaccagttataacag |
315 |
Q |
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| T |
37816659 |
aatcaataattcacattgattcgattgagccaataaatctcaaaatcaaaatcaaaacaatgacaagactagcaccatgtgcctaaaccagttataacag |
37816758 |
T |
|
| Q |
316 |
aaagattcatagtgaagttagtgaagctaaattttaccttccccaataatcccaacgcggttgatatgtttcctggatgggggtattcgaaaacgagcaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37816759 |
aaagattcatagtgaagttagtgaagctaaattttaccttccccaataatcccaacgcggttgatatgtttcctggatggggctattcgaaaacgagcaa |
37816858 |
T |
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| Q |
416 |
gaatagcaatctgaaccagtaccattagtaagatacaggttagcataactaacatcaccaaccaatagaataagatcaggatg |
498 |
Q |
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| T |
37816859 |
gaatagcaatctgaaccagtaccattagtaagatataggttagcataactaacatcaccaaccaatagaataagatcaggatg |
37816941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 24 - 234
Target Start/End: Original strand, 37809053 - 37809263
Alignment:
| Q |
24 |
agcattataaaatgtattcctcccgcattgaaagaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataagcaa |
123 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37809053 |
agcattataaaatgtattcctcccgcattgaaagaataatataaagttgaagatgacccactctcttccgacggaaatgcaaatcgagaactataagcaa |
37809152 |
T |
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| Q |
124 |
cgaatgtcttgttttcagcttgttcttctatctcatgattcccttccactaccattattgggacactagcaatcagaggttccatgtacctgaatcaata |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | ||||| |||||||||||||||||| |||| |
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| T |
37809153 |
cgaatgtcttgttttcagcttgttcttctatctcatgattcccttctactaccattaccgggacactggaaatcaatggttccatgtacctgaataaata |
37809252 |
T |
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| Q |
224 |
attcacattga |
234 |
Q |
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|| ||||||| |
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| T |
37809253 |
atcaacattga |
37809263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 344 - 498
Target Start/End: Original strand, 37809319 - 37809473
Alignment:
| Q |
344 |
aaattttaccttccccaataatcccaacgcggttgatatgtttcctggatgggggtattcgaaaacgagcaagaatagcaatctgaaccagtaccattag |
443 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||| ||||| || ||||| ||||||||||||||||| ||||||| |
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| T |
37809319 |
aaattttaccttccccaataatcccaacgtggttgatatgtttcatggataggagtattagaaaatgaacaagagtagcaatctgaaccagtgccattag |
37809418 |
T |
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| Q |
444 |
taagatacaggttagcataactaacatcaccaaccaatagaataagatcaggatg |
498 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
37809419 |
taagatacatgttagcataactagcatctccaaccaatagaataagatcaggatg |
37809473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 184
Target Start/End: Complemental strand, 19906914 - 19906751
Alignment:
| Q |
21 |
ccaagcattataaaatgtattcctcccgcattgaaagaataatagaaagtggatgatgatccactctcttctgacggaaatgcaaatcgagaactataag |
120 |
Q |
| |
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|||||||| |||||||| || || || |||||||||||||| ||||| |||||||| |||||||| ||||| || || || ||||| | ||||| |||| |
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| T |
19906914 |
ccaagcataataaaatgaatgcccccagcattgaaagaatagtagaatgtggatgacgatccactttcttcagaggggaacgcaaacctggaactgtaag |
19906815 |
T |
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| Q |
121 |
caacgaatgtcttgttttcagcttgttcttctatctcatgattcccttccactaccattattgg |
184 |
Q |
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| || ||||||| |||| ||| |||| ||| || |||||||| ||||| || ||||||||||| |
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| T |
19906814 |
ccacaaatgtctggtttctagcctgtttttcaatttcatgatttccttctaccaccattattgg |
19906751 |
T |
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