View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1979_high_2 (Length: 432)
Name: NF1979_high_2
Description: NF1979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1979_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 12 - 393
Target Start/End: Original strand, 43412613 - 43412994
Alignment:
| Q |
12 |
tgatatgaaataatattacatactgtgttcaatgccatgtttgagaatctttgttattaattctaattcaattttgacattctatgaaaacgtttgattc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43412613 |
tgatatgaaataatattacatactgtgttcaatgccatgtttgagaatctttgttattaattctaattcaattttgacattctatgaaaacgtttgattc |
43412712 |
T |
|
| Q |
112 |
agctcnnnnnnnnactatcaaaaaactcatcaatattgctgccccaactatatagtatactcccttagcatgtctcgaatgaatatactcttgccctaag |
211 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43412713 |
agctcttttttttactatcaaaaaactcatcaatattgctgccccaactatatagtatactcccttagcatgtctcgaatgaatatactcttgccctaag |
43412812 |
T |
|
| Q |
212 |
tctctccttagcatggtttatcataggtttgccttgcctagtttagattcgctttcttaatggattcatgggtgcaatatatatagttggggttaaccat |
311 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43412813 |
tctcttcttagcatggtttatcataggtttgccttgcctagtttagattcgctttcttaatggattcatgggtgcaatatatatagttggggttaaccat |
43412912 |
T |
|
| Q |
312 |
tttataatgatgtctttacactttattttaacttttnnnnnnntattacatcttctattttatcatgttcacgaaaataatc |
393 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43412913 |
tttataatgatgtatttacactttattttaacttttaaaaaaatattacatcttctattttatcatgttcacgaaaataatc |
43412994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University