View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1979_high_3 (Length: 381)
Name: NF1979_high_3
Description: NF1979
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1979_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 371
Target Start/End: Complemental strand, 4116989 - 4116638
Alignment:
| Q |
20 |
agagcgtcaaatagatatttatgtctgatgtgcagtgaccagagcaggttatttataacattctctaatttaatttgcattgcataaatttcacttttca |
119 |
Q |
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| T |
4116989 |
agagcgtcaaatagatatttatgtctgatgtgcagtgaccagagcaggttatttataacattctctaatttaatttgcattgcataaatttcacttttca |
4116890 |
T |
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| Q |
120 |
atgagattgagtttgaaccacttatagactatagcgagggattttgattttcggaagtcacgtagttatgaatctcgatcatttgataacgatctggaag |
219 |
Q |
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| T |
4116889 |
atgagattgagtttgaacctcttatagactatagcgagggattttgattttcggaagtcacgtagttatgaatctcgatcatttgataacgatctggaag |
4116790 |
T |
|
| Q |
220 |
tttgtatttgaagatgtgtatttaaaaactgtcggatcttcatgcaatggtcgacatcccttcaatacgcgcatgtgtgcttttcctgattgcaggaaat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116789 |
tttgtatttgaagatgtgtatttaaaaactgtcggatcttcatgcaatggtcgacatcacttcaatacgcgcatgtgtgcttttcctgattgcaggaaat |
4116690 |
T |
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| Q |
320 |
tctagtatataagctcatgaaactaagttgtgtacattttacaggtcttcat |
371 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4116689 |
tctagtctataagctcatgaaactaagttgtgtacattttacaggtcttcat |
4116638 |
T |
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