View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_high_1 (Length: 758)
Name: NF19800_high_1
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 229 - 752
Target Start/End: Original strand, 42111860 - 42112381
Alignment:
| Q |
229 |
ttgataatgttaactagaataaagacctttggtccctcacaatttgttcgcggccaatttaggnnnnnnnncaattcccaaattagtccataacatttcc |
328 |
Q |
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| T |
42111860 |
ttgataatgttaactagaataaagacctttggtccctcacaatttgttcgcggccaatttaggaaaaaaaacaattcccaaattagtccgtaacatttcc |
42111959 |
T |
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| Q |
329 |
atataggagataaattagtctctgactgatcatcaaacagatggctaactagtcctccgtgtgcaaatgcagggactaatttgattattaatttttgtga |
428 |
Q |
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| T |
42111960 |
atataggagataaattagtctctgactgatcatcaaacagatggctaactagtcctccgtgtgcaaatgcagggactaatttgattattaatttttgtga |
42112059 |
T |
|
| Q |
429 |
agggctaaattgggtcatttgtctattatctaattatactttacctcattctggttgagaccattagtagaacaagtggactgcttctgtttcgttacct |
528 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42112060 |
agggctaaattgggtcgtttgtctattatctaattatactttacctcattctggttgagaccattagtagaacaagtggactgcttctgtttcgttacct |
42112159 |
T |
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| Q |
529 |
catcttgatttttcctcctaatccttggttgatcatgttcttaatgaagatgaacataaagggtcaatttaattatataagattagccataaaaaataag |
628 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42112160 |
catcttgatttttcctcctaatccttggttgatcatgttcttaatgaagatgaacataaagggtcaatttaattatataagattagccat--aaaataag |
42112257 |
T |
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| Q |
629 |
aaacaagtagagaannnnnnncaaaactggtaaattagcacagctacctgattttgatcctttcacattctgctggaatgtataggctgcaactgaagca |
728 |
Q |
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| T |
42112258 |
aaacaagtagagaatttttttcaaaactggtaaattagcacaactacctgattttgatcctttcacattctgctggaatgtataggctgcaactgaagca |
42112357 |
T |
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| Q |
729 |
gctataaggaatcctaacctaact |
752 |
Q |
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|||||||||||||||||||||||| |
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| T |
42112358 |
gctataaggaatcctaacctaact |
42112381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 42111649 - 42111794
Alignment:
| Q |
18 |
aagtcagtctgctcagatagaaggctttcaaattcagatagaatttcatcgtcaaaatcattagctagattcattatgctgcccattaacttaacctcct |
117 |
Q |
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| T |
42111649 |
aagtcagtctgctcagatagaaggctttcaaattcagatagaatttcatcgtcaaaatcattagctagattcattatgctgcccattaacttaacctcct |
42111748 |
T |
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| Q |
118 |
cttctagctcttcctcttccctctacaacaacgtcgaaacatattg |
163 |
Q |
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| T |
42111749 |
cttctagctcttcttcttccctctacaacaacgtcgaaacatattg |
42111794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 21963360 - 21963271
Alignment:
| Q |
31 |
cagatagaaggctttcaaattcagatagaatttcatcgtcaaaatcattagctagattcattatgctgcccattaacttaacctcctctt |
120 |
Q |
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|||||| |||| ||||||||| | |||||| ||||| ||||||||||| ||| |||| ||||||||| ||||| ||||||||||||| |
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| T |
21963360 |
cagataaaaggtcttcaaattctggtagaatatcatcttcaaaatcattcgctcgattgattatgctgttaattaatttaacctcctctt |
21963271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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