View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19800_high_10 (Length: 455)
Name: NF19800_high_10
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 20 - 443
Target Start/End: Original strand, 40201210 - 40201633
Alignment:
| Q |
20 |
aaaagcaccaccatctgaggcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40201210 |
aaaagcaccaccatctgaggcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatat |
40201309 |
T |
|
| Q |
120 |
gccgcgtttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatcc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40201310 |
gccgcgtttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatcc |
40201409 |
T |
|
| Q |
220 |
accttataggttcataccaagtttactgccaacccctttatgcattcgttgaaagttacacggcgaaaagattccctcagagtgattttgtgaataagaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40201410 |
accttataggttcataccaagtttactgccaacccctttatgcattcgttgaaagttacacggcgaaaagattccctcagagtgattttgtgaataagaa |
40201509 |
T |
|
| Q |
320 |
cataaaaattccaatccctggcatacaaatgtacaagctcaacctatttagattggtttggaggacaatttttgtaatattatcaactttggtagcaatg |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40201510 |
cataaaaattccaatccctggcatacaaatgtacaagctcaacctatttagattggtttggaggacaatttttgtaatattatcaactttggtagcaatg |
40201609 |
T |
|
| Q |
420 |
ctccttccattcttcaatgatatt |
443 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
40201610 |
ctccttccattcttcaatgatatt |
40201633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 34 - 439
Target Start/End: Original strand, 40204816 - 40205221
Alignment:
| Q |
34 |
ctgaggcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaa |
133 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40204816 |
ctgaggcaaagacaatgaagaaggctacaatcatcagcgttgcatcgacaacatttttctacatgctttgcggctgttttggatatgctgcgtttggaaa |
40204915 |
T |
|
| Q |
134 |
ttcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccaccttataggttca |
233 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |
|
|
| T |
40204916 |
ttcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacctcattggtgcg |
40205015 |
T |
|
| Q |
234 |
taccaagtttactgccaacccctttatgcattcgttgaaagttacacggcgaaaagattccctcagagtgattttgtgaataagaacataaaaattccaa |
333 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
40205016 |
taccaagtctactgccaacccctttatgcattcgtcgaaaattacacggcaaaaagattccctcgcagtgattttgtgaataagaacataaaaattccaa |
40205115 |
T |
|
| Q |
334 |
tccctggcatacaaatgtacaagctcaacctatttagattggtttggaggacaatttttgtaatattatcaactttggtagcaatgctccttccattctt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| || |
|
|
| T |
40205116 |
tccctggcatacaaatgtacaagctcaacctatttaggttggtttggaggacaatttttgtaatattaacaactttggtatctatgctccttccattttt |
40205215 |
T |
|
| Q |
434 |
caatga |
439 |
Q |
| |
|
|||||| |
|
|
| T |
40205216 |
caatga |
40205221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 33 - 439
Target Start/End: Original strand, 40208861 - 40209267
Alignment:
| Q |
33 |
tctgaggcaaaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaa |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||| |||||||||||||| || || ||||||| |
|
|
| T |
40208861 |
tctgaggcaaaaacaatgaagaaggctacaatcatcggcgttgcagcgacagcatttttctacatgctttgtggctgttttggatacgcggcatttggaa |
40208960 |
T |
|
| Q |
133 |
attcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccaccttataggttc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| | |
|
|
| T |
40208961 |
attcaagtcctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgttgccatagttatccacctcattggtgc |
40209060 |
T |
|
| Q |
233 |
ataccaagtttactgccaacccctttatgcattcgttgaaagttacacggcgaaaagattccctcagagtgattttgtgaataagaacataaaaattcca |
332 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40209061 |
ataccaagtctactgccaacccctttatgcattcgttgaaaattacacagcgaaaagattccctcagagtgatcttgtgaataagaacataaaaattcca |
40209160 |
T |
|
| Q |
333 |
atccctggcatacaaatgtacaagctcaacctatttagattggtttggaggacaatttttgtaatattatcaactttggtagcaatgctccttccattct |
432 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | |
|
|
| T |
40209161 |
atccctggcagacaaatgtgcaagctcaacctatttagattggtttggaggacaatttttgtaatattaacaactttggtatcaatgctccttccatttt |
40209260 |
T |
|
| Q |
433 |
tcaatga |
439 |
Q |
| |
|
||||||| |
|
|
| T |
40209261 |
tcaatga |
40209267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 42 - 224
Target Start/End: Complemental strand, 10298772 - 10298590
Alignment:
| Q |
42 |
aaaacaatgaagaaggctacaattatcagcgttgcagcgacaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaagtc |
141 |
Q |
| |
|
||||||||||| |||||||| | ||||| ||| || ||||| |||||||||||| | || || ||||| ||||| || || |||||| | ||||||| |
|
|
| T |
10298772 |
aaaacaatgaaaaaggctaccttaatcagtgttatagtaacaaccattttctacatgatgtgtggttgtttcggatacgcagcttttggagactcaagtc |
10298673 |
T |
|
| Q |
142 |
ctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaatgctgccatagttatccacctt |
224 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||| || || |||||||| || ||||||||||| || || |||||||||||| |
|
|
| T |
10298672 |
ctggaaaccttctaaccggtttcggtttctataatcctttctggctcctcgatatagccaatgccgcaattgttatccacctt |
10298590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 81 - 199
Target Start/End: Complemental strand, 10295105 - 10294987
Alignment:
| Q |
81 |
acaacaattttctacatgctttgcggctgttttggatatgccgcgtttggaaattcaagtcctggaaaccttttaaccggttttggtttctataacccat |
180 |
Q |
| |
|
||||| |||||||||||| | | ||| ||||||||||| || | |||||| | ||||| || | ||||||| |||||| |||||||||||||||||| | |
|
|
| T |
10295105 |
acaaccattttctacatgatgtacggttgttttggatacgcaacttttggagactcaagccccgtaaaccttctaaccgtttttggtttctataaccctt |
10295006 |
T |
|
| Q |
181 |
tttggctccttgacatagc |
199 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
10295005 |
cttggctcctagatatagc |
10294987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 439
Target Start/End: Complemental strand, 10298453 - 10298372
Alignment:
| Q |
358 |
tcaacctatttagattggtttggaggacaatttttgtaatattatcaactttggtagcaatgctccttccattcttcaatga |
439 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||||| || || ||||| | || ||||||| || |||||||||||||| |
|
|
| T |
10298453 |
tcaacctctttagattggtttggaggtcaatctttgtgatcataacaactgtaatatcaatgcttctaccattcttcaatga |
10298372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 27876019 - 27876080
Alignment:
| Q |
141 |
cctggaaaccttttaaccggttttggtttctataacccattttggctccttgacatagccaa |
202 |
Q |
| |
|
|||||||| ||||| || |||||||| ||||||||||| | |||||| |||||||| ||||| |
|
|
| T |
27876019 |
cctggaaatcttttgactggttttggattctataacccctattggcttcttgacattgccaa |
27876080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University