View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_high_19 (Length: 299)
Name: NF19800_high_19
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_high_19 |
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| [»] chr5 (7 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 33 - 299
Target Start/End: Complemental strand, 11901643 - 11901376
Alignment:
| Q |
33 |
tgttaagtttaccttgaacgcctgtcccaattgcgaatttctcacaccactggatcagcttcctggactcaaggttctccaacttcggagactggactct |
132 |
Q |
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| T |
11901643 |
tgttaagtttaccttgaacgactgtcccaaatgcgagtttctccccccaatggatcagcttccacatctcaaggttctccaaattcggagactggactct |
11901544 |
T |
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| Q |
133 |
ctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaatannnnnnnn-ccatccttgaaggaacttacaatctcggatt |
231 |
Q |
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| T |
11901543 |
ctgaaattcattgcagaaaacaatcaagttggtaattccccttcctctactaccccaatattgttttttccatccttgaaggaacttacaatttcggatt |
11901444 |
T |
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| Q |
232 |
gtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatt |
299 |
Q |
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| T |
11901443 |
gtcctaatctgaaaagttggtgggaaaatgagatttggggtaatgatagaccatatttcagttgcatt |
11901376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 33 - 299
Target Start/End: Original strand, 12039658 - 12039925
Alignment:
| Q |
33 |
tgttaagtttaccttgaacgcctgtcccaattgcgaatttctcacaccactggatcagcttcctggactcaaggttctccaacttcggagactggactct |
132 |
Q |
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| T |
12039658 |
tgttaagtttaccttgaatgactgcccaaaatgcgaatttctcccgccaatggatgagcttccacatctcaaggttctccaacttcgaaggttggactca |
12039757 |
T |
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| Q |
133 |
ctgaaattcattgaagnnnnnnntcaagttggtaataccccttcctctactacagcaatannnnnnnn-ccatccttgaaggaacttacaatctcggatt |
231 |
Q |
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| T |
12039758 |
ctgaaattcattgcaaaaaacaatcaagttggtaatttcccttcctttactacaccaatattattttttccatccttgaaggaacttacaatctcggatt |
12039857 |
T |
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| Q |
232 |
gtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatt |
299 |
Q |
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| T |
12039858 |
gtccaaatctaaacagttggtgggaaactgagatatgggataatgatagaccatctttcagttgcatt |
12039925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 11860897 - 11861002
Alignment:
| Q |
40 |
tttaccttgaacgcctgtcccaattgcgaatttctcacaccactggatcagcttcctggactcaaggttctccaacttcggagactggactctctgaaat |
139 |
Q |
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| T |
11860897 |
tttaccttgaacgactgtcccaattgcaaatttctcccaccaatggatcagcttccacatctcaaggttctccaacttcggagattggactctttgaaat |
11860996 |
T |
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| Q |
140 |
tcattg |
145 |
Q |
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|||||| |
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| T |
11860997 |
tcattg |
11861002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 11828758 - 11828870
Alignment:
| Q |
33 |
tgttaagtttaccttgaacgcctgtcccaattgcgaatttctcacaccactggatcagcttcctggactcaaggttctccaacttcggagactggactct |
132 |
Q |
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|||||||||||||||||| | ||||||||| |||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||| |||||||| |
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| T |
11828758 |
tgttaagtttaccttgaatgactgtcccaaatgcgaatttctcccaccaatggatgagcttccacatctcaaggttctccaacttcggagattggactct |
11828857 |
T |
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| Q |
133 |
ctgaaattcattg |
145 |
Q |
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| T |
11828858 |
ttgaaatttattg |
11828870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 11861038 - 11861136
Alignment:
| Q |
201 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatt |
299 |
Q |
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| T |
11861038 |
ccatccttgaaggaacttgcaatctcagattgtcctaatctaaaaagttggtgggaaaaagacatacgggaaaatgatagaccatctttcagttgcatt |
11861136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 11828906 - 11829004
Alignment:
| Q |
201 |
ccatccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatgagatttggggtaatgatagaccatatttcagttgcatt |
299 |
Q |
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| T |
11828906 |
ccatccttgaaggaactaacaatctcagattgtcttaaactaaaaggttggtgggaaaatgacatatgggacaatgatagaccatctttcagttgcatt |
11829004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 11732735 - 11732792
Alignment:
| Q |
205 |
ccttgaaggaacttacaatctcggattgtcctaatctgaaaagttggtggaaaaatga |
262 |
Q |
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| T |
11732735 |
ccttgaaggagcttacaatttcggattgtcctaaactcgaaagttggtgggaaaatga |
11732792 |
T |
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