View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_high_21 (Length: 278)
Name: NF19800_high_21
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 35136334 - 35136582
Alignment:
| Q |
18 |
attcttagacttaatgcatcatgagcatattaaagtaaaatattaaacattgtgatctattttgtgatgatgttgtatatctctggtttgagtattctta |
117 |
Q |
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| T |
35136334 |
attcttagacttaatgcatcatgagcatattaaagtaaaatattaaacattgtgatctattttgtgatgatgttgtatatctctggtttgagtattctta |
35136433 |
T |
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| Q |
118 |
cactctaattattaacattgtgatcttttttccacttcaaaagaaataataattttgtcnnnnnnntaaacaataataattgctatcttgattttgcaca |
217 |
Q |
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| T |
35136434 |
cactctaattattaacattgtgatcttttttccacttcaaaagaaataataattttgtcaaaaaaataaacaataataattgctatcttgattttgcaca |
35136533 |
T |
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| Q |
218 |
atgaaacagcatatttcattcatcattatctttttaattaggaactctc |
266 |
Q |
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| T |
35136534 |
atgaaacagcatatttcattcatcattatctttttaattaggaactctc |
35136582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 35144785 - 35144835
Alignment:
| Q |
186 |
aacaataataattgctatcttgattttgcacaatgaaacagcatatttcat |
236 |
Q |
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| T |
35144785 |
aacaataataaatgctctcttgattttgcacattgaaactgcatatttcat |
35144835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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