View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_high_22 (Length: 263)
Name: NF19800_high_22
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 30367083 - 30367004
Alignment:
| Q |
18 |
gacagtagcataccaactattggccatttcggcataatttcaccgccattgtgtcgccaatagtagaagtaaatgaagaa |
97 |
Q |
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| T |
30367083 |
gacaatagcataccaactattggccaattcggcataatctcaccgccattgtgtcgcctatagtagatgtaaatgaagaa |
30367004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 31376712 - 31376787
Alignment:
| Q |
18 |
gacagtagcataccaactattggccatttcggcataatttcaccgccattgtgtcgccaatagtagaagtaaatga |
93 |
Q |
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| T |
31376712 |
gacagtagcataccaactattggccaattcatcataatctcaccgccattgtgtcgccaatagtagatgtaaatga |
31376787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 31397856 - 31397810
Alignment:
| Q |
103 |
tggcaggtagagcagtctaatttttctaacgaaccttactgatgtag |
149 |
Q |
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| T |
31397856 |
tggcaggtagagcagtctaatttttggaaccaacctgactgatgtag |
31397810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 31397758 - 31397725
Alignment:
| Q |
202 |
atataagtattgaattcaactagagtttgctttt |
235 |
Q |
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| T |
31397758 |
atataagtattgaattcaactagaatttgctttt |
31397725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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