View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19800_high_36 (Length: 222)

Name: NF19800_high_36
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19800_high_36
NF19800_high_36
[»] chr1 (1 HSPs)
chr1 (139-206)||(45592373-45592440)
[»] chr3 (1 HSPs)
chr3 (29-78)||(27484860-27484909)
[»] chr2 (1 HSPs)
chr2 (54-99)||(33456021-33456066)
[»] scaffold0050 (1 HSPs)
scaffold0050 (32-104)||(51610-51682)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 45592373 - 45592440
Alignment:
Q  139 tcagtaatatttgtttttaagtcaccttcagttcgaccgcggtataatcacattgatataattatatt 206  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45592373 tcagtaatatttgtttgtaagtcaccttcagttcgaccgcggtataatcacattgatataattatatt 45592440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 27484909 - 27484860
Alignment:
Q  29 tgaacatgagtttataagtgagatgaatcctcaccttacaaaccggtttt 78  Q
    |||||||| ||||||||||||||| ||| ||||| ||| |||||||||||    
T  27484909 tgaacatgtgtttataagtgagatcaattctcactttataaaccggtttt 27484860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 33456021 - 33456066
Alignment:
Q  54 aatcctcaccttacaaaccggttttatcagtttgagttcggcccaa 99  Q
    ||||||||||||||||||||||||| | || ||||||| |||||||    
T  33456021 aatcctcaccttacaaaccggttttgtaaggttgagttaggcccaa 33456066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 51610 - 51682
Alignment:
Q  32 acatgagtttataagtgagatgaatcctcaccttacaaaccggttttatcagtttgagttcggcccaatataa 104  Q
    ||||| |||| |||||||| | ||||||| ||||||||||||||||| | ||  |||||| |||| |||||||    
T  51610 acatgggtttgtaagtgagttcaatcctcgccttacaaaccggttttgtaaggatgagttaggcctaatataa 51682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University