View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19800_high_6 (Length: 619)
Name: NF19800_high_6
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_high_6 |
 | |
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| [»] scaffold0568 (2 HSPs) |
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Alignment Details
Target: scaffold0568 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: scaffold0568
Description:
Target: scaffold0568; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 381 - 613
Target Start/End: Original strand, 2390 - 2622
Alignment:
| Q |
381 |
tgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccag |
480 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
2390 |
tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccag |
2489 |
T |
|
| Q |
481 |
cagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgtatggttgccttt |
580 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||| || ||||||| |
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|
| T |
2490 |
cagcttctgtggtgcggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttatgcatagggggtcattgttcttgtccggctgccttt |
2589 |
T |
|
| Q |
581 |
ccagatagtttttgggtctttgtatacctttgc |
613 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
2590 |
ccggatagtttttgggtctttgtatacctttgc |
2622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0568; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 381 - 613
Target Start/End: Original strand, 8992 - 9224
Alignment:
| Q |
381 |
tgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccag |
480 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
8992 |
tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgccag |
9091 |
T |
|
| Q |
481 |
cagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgtatggttgccttt |
580 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||||| |||||||||||||||||||| || ||||||| |
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|
| T |
9092 |
cagcttctgtggtgcggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggtgttatgcatagggggtcattgttcttgtccggctgccttt |
9191 |
T |
|
| Q |
581 |
ccagatagtttttgggtctttgtatacctttgc |
613 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
9192 |
ccggatagtttttgggtctttgtatacctttgc |
9224 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 381 - 613
Target Start/End: Original strand, 17060414 - 17060646
Alignment:
| Q |
381 |
tgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagagg-cggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgcca |
479 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
17060414 |
tgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttagggggcggctgctgctgtgtgcacctgctgtcagctggtgtttgctgctgcca |
17060513 |
T |
|
| Q |
480 |
gcagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgtatggttgcctt |
579 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||| ||||| ||||||| |||||||||||||||||||| ||| |||||| |
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|
| T |
17060514 |
gcagcttctgtggtgcggttcagcacgtgttggtgtggttgggggcttggtttggtgcggtgttatgcatagggggtcattgttcttgtctggctgcctt |
17060613 |
T |
|
| Q |
580 |
tccagatagtttttgggtctttgtatacctttgc |
613 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||| |
|
|
| T |
17060614 |
tccggatag-ttttgggtctttgtatacctttgc |
17060646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 43262207 - 43262165
Alignment:
| Q |
80 |
atttggttacaagactttattattagtgactaggttaaccttt |
122 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
43262207 |
atttggttacaagactttattattagagactaggttaatcttt |
43262165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 80 - 122
Target Start/End: Original strand, 36229201 - 36229243
Alignment:
| Q |
80 |
atttggttacaagactttattattagtgactaggttaaccttt |
122 |
Q |
| |
|
|||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
36229201 |
atttcgttacatgactttattattagagactaggttaaccttt |
36229243 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 2e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 120 - 336
Target Start/End: Original strand, 48223632 - 48223847
Alignment:
| Q |
120 |
tttgtacggagttctcttttgcttgttgttatgatttttaatgaaaaatgtttcacatttgttacggtgatagtgtctttcaagtttcaggtatgctaag |
219 |
Q |
| |
|
||||||| ||||||| ||||||||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48223632 |
tttgtacatagttctcctttgcttgttgttctgttttttaatgaaaaatgtttcacatttgttttggtgataatgtctttcaagtttcaggtatgctaag |
48223731 |
T |
|
| Q |
220 |
gaggttccatttggttcacaagaagtatctgtgtctgctgtttgaatggatttggaaccagagagaatgttgcattcggtagttgtgtttggggtgtttt |
319 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||| ||| |
|
|
| T |
48223732 |
gaggttccatttggtttacaagaagtacttgtgtctgctgtttgaacggatttggaacccgagagaatgttgcattttgtagttgtgtttggggtg-ttt |
48223830 |
T |
|
| Q |
320 |
tctggtggactggcttt |
336 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
48223831 |
tctggtggactggcttt |
48223847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 378 - 613
Target Start/End: Original strand, 48223871 - 48224114
Alignment:
| Q |
378 |
tgttgtttgcaggttctgtttgctgttttggtgggtgctgccttctgtcagaggcggttgctgctgtgtgcacctgctgtcagtcggtgttt-------- |
469 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||| |
|
|
| T |
48223871 |
tgttgttcgcaggttctgtttgctgttttggtgggtgctgccttctgttaagggcggctgctgctatgtgcacctgctgtcagctggtgttttttttgtt |
48223970 |
T |
|
| Q |
470 |
gctgctgccagcagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggtcattgttcttgta |
569 |
Q |
| |
|
| || || ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48223971 |
gttgttgtcagcagcttctgtggtgcggttcagcacgtgttggtgtgcttgggggctgggtttggtgcggcgttatgcgtagggggtcattgttcttgtc |
48224070 |
T |
|
| Q |
570 |
tggttgcctttccagatagtttttgggtctttgtatacctttgc |
613 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48224071 |
cggctgcctttccggatagtttttgggtctttgtatacctttgc |
48224114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 127 - 239
Target Start/End: Complemental strand, 23657132 - 23657017
Alignment:
| Q |
127 |
ggagttctcttttgcttgttgttatgatttttaatgaaaaatg--tttcacatttgttacggtgatagtgtctttcaagtttcaggt-atgctaaggagg |
223 |
Q |
| |
|
|||||| ||| || |||| ||||||| ||||||||||| | | |||||||||||||| | ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23657132 |
ggagttatctcttccttgatgttatgctttttaatgaacgaggggtttcacatttgttatgatgatagtgtctttcaagtttcaggtgatgctaaggaga |
23657033 |
T |
|
| Q |
224 |
ttccatttggttcaca |
239 |
Q |
| |
|
||| |||||||||||| |
|
|
| T |
23657032 |
ttctatttggttcaca |
23657017 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 5525869 - 5525996
Alignment:
| Q |
120 |
tttgtacggagttctcttttgcttgttgttatgatttttaatgaaaaatgtttcacatttgttacggtgatagtgtctttcaagtttcaggtatgctaag |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
5525869 |
tttgtacggagttctcttttgcttgttgttatgctttttaatgaacaatgtttcacatttgttatggtgatagagtctttcaagtttcaggtatgctaag |
5525968 |
T |
|
| Q |
220 |
gaggttccatttggttcacaagaagtat |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
5525969 |
gaggttccatttggttcacaagaagtat |
5525996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 5525716 - 5525819
Alignment:
| Q |
18 |
aatgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaactcgacctccaaatttggttacaagactttattattagtgactaggttaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
5525716 |
aatgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaatttggttacaagactttattatttgtga-taggttaa |
5525814 |
T |
|
| Q |
118 |
ccttt |
122 |
Q |
| |
|
||||| |
|
|
| T |
5525815 |
ccttt |
5525819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 486
Target Start/End: Original strand, 5357132 - 5357188
Alignment:
| Q |
430 |
ggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagctt |
486 |
Q |
| |
|
|||||||| |||| | ||| |||||||||||| |||||| || |||||||||||||| |
|
|
| T |
5357132 |
ggcggttggtgctatttgctcctgctgtcagttggtgttagcagctgccagcagctt |
5357188 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 30005582 - 30005645
Alignment:
| Q |
18 |
aatgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaactcgacctccaaat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
30005582 |
aatgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaattcgacctccaaat |
30005645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 45203425 - 45203488
Alignment:
| Q |
18 |
aatgaaaagattgaggcatccaaatgtggttctcttcatgggagctgtaactcgacctccaaat |
81 |
Q |
| |
|
||||| |||| |||||||||||||||| |||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
45203425 |
aatgagaagactgaggcatccaaatgttgttctcttcatgggagctataactagacctccaaat |
45203488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 468 - 556
Target Start/End: Original strand, 36427944 - 36428032
Alignment:
| Q |
468 |
ttgctgctgccagcagcttctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagggggt |
556 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| || | || |||||||| ||||| | |||||||||||||| | |||||||||||||| |
|
|
| T |
36427944 |
ttgctgctgccagcagctgctgtgttgcgggtctgtgtgctttggtgtgtttgggggttgggtttgatgcggtggtatgcgtagggggt |
36428032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 430 - 560
Target Start/End: Original strand, 49571424 - 49571555
Alignment:
| Q |
430 |
ggcggttgctgctgtgtgcacctgctgtcagtcggtgtttgctgctgccagcagct-tctgtggtgcggttcagcatgtgttggtgtgcttgggtgctgg |
528 |
Q |
| |
|
|||||||| |||| | ||| |||||||||||| |||||| || ||||||||||||| ||||||| ||||||| || | ||| ||||| ||| ||||| |
|
|
| T |
49571424 |
ggcggttggtgctatttgctcctgctgtcagttggtgttagcagctgccagcagctatctgtggcgcggttctgcgcggtttgttgtgcaagggggctgg |
49571523 |
T |
|
| Q |
529 |
gtttgatgcggcgttatgcgtagggggtcatt |
560 |
Q |
| |
|
|||||||| || ||||||||||||| |||| |
|
|
| T |
49571524 |
ttttgatgcagctgtatgcgtagggggccatt |
49571555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 552
Target Start/End: Complemental strand, 36616151 - 36616105
Alignment:
| Q |
506 |
gtgttggtgtgcttgggtgctgggtttgatgcggcgttatgcgtagg |
552 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| |||||||||| |
|
|
| T |
36616151 |
gtgttggtgtgcttgggggctggggttgatgcggcggtatgcgtagg |
36616105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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