View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19800_high_8 (Length: 512)

Name: NF19800_high_8
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19800_high_8
NF19800_high_8
[»] chr5 (13 HSPs)
chr5 (13-494)||(39475324-39475805)
chr5 (144-494)||(39450949-39451299)
chr5 (142-436)||(39471983-39472274)
chr5 (141-494)||(39486405-39486764)
chr5 (148-456)||(39454592-39454897)
chr5 (142-457)||(39460197-39460509)
chr5 (148-450)||(39464451-39464750)
chr5 (142-485)||(39470642-39470979)
chr5 (340-494)||(39483405-39483556)
chr5 (122-372)||(39458286-39458536)
chr5 (122-263)||(39480300-39480441)
chr5 (147-251)||(43312626-43312730)
chr5 (402-454)||(39458207-39458259)


Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 494
Target Start/End: Original strand, 39475324 - 39475805
Alignment:
13 catcaaacactcctagtataatataattatattcatactaataattatctacactattcctattcctatttaaataacaggaacatcaaaacaacaattc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39475324 catcaaacactcctagtataatataattatattcatactaataattatctacactattcctattcctatttaaataacaggaacatcaaaacaacaattc 39475423  T
113 aaaacacagtcacactgatcaagtgtatatccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39475424 aaaacacagtcacactgatcaagtgtatatccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttga 39475523  T
213 gtttgtgaagcttctaatcaatcgtgataaccgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcc 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39475524 gtttgtgaagcttctaatcaatcgtgataaccgtctccgagtaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcc 39475623  T
313 cttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaag 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39475624 cttcctatctcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaag 39475723  T
413 ctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgt 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
39475724 ctcagaaaccaaacgtaaaacaagctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgt 39475805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 144 - 494
Target Start/End: Original strand, 39450949 - 39451299
Alignment:
144 caagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataac 243  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||| ||||| || | |||||||||||||||||||||||||    
39450949 caagatgaagaaagcagaagtggtgtttatcccttttcctggtgtgagccatctagtttccacccttgaattcgcgaagcttctaatcaatcgtgataac 39451048  T
244 cgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatca 343  Q
    |||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
39451049 cgtctccgagtaactgttttagttatcaaattcccacatatatcagaaaatgatgtcaacactaaatcccttcctatctcagattctctcaacatcatca 39451148  T
344 accttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctc 443  Q
    |||||||||||||||||||||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||| || |||||||| || ||    
39451149 accttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttc 39451248  T
444 caacctcactactagagaaggacaacatggacacctcgccgccttcgttgt 494  Q
     |||||||||||| ||| |||| || |||||  ||||||| || |||||||    
39451249 taacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgt 39451299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 142 - 436
Target Start/End: Original strand, 39471983 - 39472274
Alignment:
142 tccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgata 241  Q
    |||||||||||||||||||||||||||||| |||||||||| | |  | | ||| || ||||  | || ||||||| ||||||||||||||| |||||||    
39471983 tccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtttctgctctcgagtttgcgaagcttctaatcaaccgtgata 39472082  T
242 accgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcat 341  Q
    |||||||||||  |||||||||||||||||||||||||||||| |||||||  |||||| |||||||||||||||||||||| || || ||| |||||||    
39472083 accgtctccgaataactgttttagttatcaaattcccacacatcacagaaaccgatgtctacactaaatcccttcctatctccgattcactccacatcat 39472182  T
342 caaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaag 436  Q
    |||||||||||||  ||||||| |||||||||| |||| ||||  ||||   ||||| || |||||||||||||||||||||||||| |||||||    
39472183 caaccttccagaatgttctcttgccccaaacacagatcaaggtccctct---atgactgcgctcctcgaagctcagaaaccaaacgtcaaacaag 39472274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 141 - 494
Target Start/End: Original strand, 39486405 - 39486764
Alignment:
141 atccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgat 240  Q
    |||||||||||||||||||||||||||| |||||||||  || ||| |  | |||||| ||||||| ||||| ||||  |||||||||||||| ||||||    
39486405 atccaagatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaatttgcaaagcttctaatcaaccgtgat 39486504  T
241 aaccgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaa------cactaaatcccttcctatctcagaatctctca 334  Q
    ||||||||||||  |||  | || || ||||||||||||||||  |||||  | |||||| |      ||| ||||||||||| || || || ||||||     
39486505 aaccgtctccgaataaccatcttggtcatcaaattcccacacaccacagatgacgatgtcgatgtctacacaaaatcccttcccatttccgattctctcc 39486604  T
335 acatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaaca 434  Q
    |  |||||||||||||||||  ||||||||||||||||||||| ||| ||||   |  |||||  |||||||| |||||||||||||||||||| |||||    
39486605 aggtcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttt---tgtcatgaacgctctccttgaagctcagaaaccaaacgtcaaaca 39486701  T
435 agctgtctccaacctcactactagagaaggaca---acatggacacctcgccgccttcgttgt 494  Q
    |||||| ||||||||||||||||||||||||||   || ||||||||| ||||||||||||||    
39486702 agctgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgt 39486764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 148 - 456
Target Start/End: Original strand, 39454592 - 39454897
Alignment:
148 atgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtc 247  Q
    ||||||||||||||||||||||||||||||| ||| ||| |  ||||| || ||||||| |||||||| | ||| ||||||||||| |||||||||||||    
39454592 atgaagaaagcagaagtggtgtttatcccttctcctggtgttggccatttagtttccacccttgagttcgcgaaacttctaatcaaccgtgataaccgtc 39454691  T
248 tccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaacct 347  Q
    |||||  ||||||||||||  ||||||| ||||||   || |||| ||||||  ||| |||||| ||||| ||||| || ||  ||  ||||||||||||    
39454692 tccgaataactgttttagtcctcaaatttccacacgccactgaaactgatgtatacagtaaatctcttccaatctccgattcaatccgcatcatcaacct 39454791  T
348 tccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaac 447  Q
    |||||||   |||||||||||||||||  ||||||   | || |||||| | |||| ||| |||||||||||||||||||| |||||||| || || |||    
39454792 tccagaatgctctcttcccccaaacactaatccag---tttcctccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaagccgtatctaac 39454888  T
448 ctcactact 456  Q
    |||| ||||    
39454889 ctcattact 39454897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 142 - 457
Target Start/End: Original strand, 39460197 - 39460509
Alignment:
142 tccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgata 241  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||  |||||| |||||||| |  |||||||||| ||| |||||||    
39460197 tccaagatgaagaaagcagaagttgtgtttatcccttttcccggtccgagccatctagattccacccttgagttcgcaaagcttctaaccaaccgtgata 39460296  T
242 accgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcat 341  Q
    | || ||||||   |||||  |||| || ||| ||||| ||| | |||||   ||||| ||||||||||| ||||| |  || || |||||| |||||||    
39460297 agcgcctccgaattactgtcctagtcatgaaactcccatacacatcagaatccgatgttaacactaaatcacttcccacttctgattctctcgacatcat 39460396  T
342 caaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtc 441  Q
    |||||||||||||||||||||||||||||||| ||| |||  |   ||    ||||  ||| ||||||||||||||||| ||||||| |||||||| ||     
39460397 caaccttccagaagtttctcttcccccaaacatcgaaccaact---tccagaatgatggctttcctcgaagctcagaaatcaaacgtcaaacaagccgta 39460493  T
442 tccaacctcactacta 457  Q
    || || ||||||||||    
39460494 tctaatctcactacta 39460509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 148 - 450
Target Start/End: Complemental strand, 39464750 - 39464451
Alignment:
148 atgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgtc 247  Q
    ||||||||||||||||| ||||||||||||||||||| | |  | |||||| ||||  | |||||||||| ||||||||||||||| |||||||||||||    
39464750 atgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttctgcccttgagtttgcgaagcttctaatcaaccgtgataaccgtc 39464651  T
248 tccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcatcaacct 347  Q
    |||||  |||  | ||||| |||||| ||||||| |   |||||   |||||| ||||||||||| |||| || || || ||||| ||  ||||||||||    
39464650 tccgaataaccatcttagtcatcaaactcccacaaaccgcagaatccgatgtctacactaaatccattcccatatctgattctcttaatgtcatcaacct 39464551  T
348 tccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaac 447  Q
    |||||||||||||||||||| || | | |||||||||| | ||   ||||  |||||||| || ||||| ||||||||||| |||||||| ||||| |||    
39464550 tccagaagtttctcttccccaaacctctgatccaggttccgct---atgaacgctctccttgatgctcacaaaccaaacgtcaaacaagccgtctctaac 39464454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 142 - 485
Target Start/End: Complemental strand, 39470979 - 39470642
Alignment:
142 tccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgata 241  Q
    ||||| ||||||||||  ||||||||||||||||||||||||| | |  | |||||| ||||  |  | ||||| |  |||||||||||||| | |||||    
39470979 tccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttctgccttagagttcgccaagcttctaatcaaccatgata 39470880  T
242 accgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatctcagaatctctcaacatcat 341  Q
    |||| ||| ||  |||||| ||||| || |||||||||||||   |||||  ||||||| || |||||||| |||| ||||| || |||||| |  ||||    
39470879 accgcctctgaataactgtcttagtcatgaaattcccacacactgcagaatctgatgtctacgctaaatccattcccatctctgattctctccatgtcat 39470780  T
342 caaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctgtc 441  Q
    ||||||||||||||||||| ||| ||||| | | |||||||||   ||    ||||  ||||||||||||||||| ||| ||||||| ||||||||| ||    
39470779 caaccttccagaagtttctgttctcccaacctctgatccaggt---tcggatatgaacgctctcctcgaagctcataaagcaaacgtcaaacaagctatc 39470683  T
442 tccaacctcactactagagaaggacaacatggacacctcgccgc 485  Q
    ||||||||||||||| ||||   ||||||||||| |||||||||    
39470682 tccaacctcactactggaga---acaacatggacccctcgccgc 39470642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 340 - 494
Target Start/End: Original strand, 39483405 - 39483556
Alignment:
340 atcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaacaagctg 439  Q
    |||||||||||||||  || |||||||||||||  ||||| || ||   || |||| |  |||||||| |||||||||||||||||| ||| ||||||||    
39483405 atcaaccttccagaatgttatcttcccccaaacttcgatctagttt---ctgccatcaacgctctccttgaagctcagaaaccaaacataatacaagctg 39483501  T
440 tctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgt 494  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
39483502 tctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgt 39483556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 122 - 372
Target Start/End: Complemental strand, 39458536 - 39458286
Alignment:
122 tcacactgatcaagtgtatatccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaa 221  Q
    |||||||||  ||||| ||||||| |||||||||||||||||||||| ||||| |||  || ||| |  | |||||| ||||||| || || ||||  ||    
39458536 tcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatctcttcacctggtgttggtcatctagtttccaccctcgaatttgcaaa 39458437  T
222 gcttctaatcaatcgtgataaccgtctccgagcaactgttttagttatcaaattcccacacataacagaaaatgatgtcaacactaaatcccttcctatc 321  Q
    |||||||||||| ||||||||||||||||||  |||| | || || || ||||| ||||||| ||||||||  |||||| |||||||||||||| | |||    
39458436 gcttctaatcaaccgtgataaccgtctccgaataactatcttggtcatgaaatttccacacacaacagaaatagatgtctacactaaatcccttgccatc 39458337  T
322 tcagaatctctcaacatcatcaaccttccagaagtttctcttcccccaaac 372  Q
       || ||||| |||||  || |||||||||||  ||||||||||||||||    
39458336 gacgattctcttaacattgtcgaccttccagaatgttctcttcccccaaac 39458286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 122 - 263
Target Start/End: Original strand, 39480300 - 39480441
Alignment:
122 tcacactgatcaagtgtatatccaagatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaa 221  Q
    |||||||||  ||||| ||||||| |||||||||||||||||||||| |||||||||  || ||| |  | |||||| ||||||| ||||| || | |||    
39480300 tcacactgagtaagtgcatatccaggatgaagaaagcagaagtggtgattatcccttcacctggtgttggtcatctagtttccacccttgaattcgcgaa 39480399  T
222 gcttctaatcaatcgtgataaccgtctccgagcaactgtttt 263  Q
    |||||||||||| ||||||||||||||||||  |||||||||    
39480400 gcttctaatcaaccgtgataaccgtctccgaataactgtttt 39480441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 251
Target Start/End: Complemental strand, 43312730 - 43312626
Alignment:
147 gatgaagaaagcagaagtggtgtttatcccttttcccggtctgagccatctaatttccacacttgagtttgtgaagcttctaatcaatcgtgataaccgt 246  Q
    ||||||||||  |||||||||||||||||||| ||| ||| || | ||| || | ||||| ||||||||||  |||||||| ||||| ||||||||||||    
43312730 gatgaagaaactagaagtggtgtttatcccttctccaggtgtgggacatttagtatccacccttgagtttgctaagcttctcatcaaccgtgataaccgt 43312631  T
247 ctccg 251  Q
    |||||    
43312630 ctccg 43312626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 454
Target Start/End: Complemental strand, 39458259 - 39458207
Alignment:
402 tctcctcgaagctcagaaaccaaacgtaaaacaagctgtctccaacctcacta 454  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||||||||||    
39458259 tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcacta 39458207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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