View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_10 (Length: 471)
Name: NF19800_low_10
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 403
Target Start/End: Complemental strand, 36055324 - 36054941
Alignment:
| Q |
9 |
gagatgaaaatgatatgcagggttttaaaccgtggttgtgttgcgattaacaataatgtttagaatcgcacgcgtaatagggtttaatcggcctcaattg |
108 |
Q |
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| T |
36055324 |
gagatgaaaatgatatgcagggttttaaaccgtggttgcgttgcgattaacaataatgtttagaatcgcacgcgtaatagggtttaatcggcctcaattg |
36055225 |
T |
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| Q |
109 |
ttatcaagtagtcgtgatagaaacattagaggaataaaaaactttgatgtcgcagttcaaatcgcagtcgtagaatagtttggaaaccttgaggatgatt |
208 |
Q |
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| T |
36055224 |
cgatcaagtagtcgtgatagaaacattagaggaataaaaaactttgatgtcgcagttcaaatcgcagtcatagaatagtttggaaaccttgagaatgatt |
36055125 |
T |
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| Q |
209 |
tcatttcaagtatttggctttgtgaaagnnnnnnnnnnnnnnnggcagaggaagagaaggaaaatcaatgagaggagggagggaagagaaccttgttttc |
308 |
Q |
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| T |
36055124 |
tcatttcaagtatttgcctttgtgaaag-----aaaaaaaaaaggcagaggaagagaaggaaaatcaatgagaggagggagggaagagaaccttgttttc |
36055030 |
T |
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| Q |
309 |
tgacaagactattacaatatcatttctatttaacttgggactctcctcctatctctttcttaccttatagtttttaaatatttaacgattcttct |
403 |
Q |
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| T |
36055029 |
tgacaagactattacaatatcatttctatttaacttgggactctcctcctatctcttccttacc------tttttaaatatttaacgattcttct |
36054941 |
T |
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