View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_12 (Length: 444)
Name: NF19800_low_12
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 170 - 426
Target Start/End: Original strand, 52080388 - 52080644
Alignment:
| Q |
170 |
atattgctgccaaacgaatcacattatctgcacttggaaacaaagccaaaccatagatcgtcaaagccaacatatccataaacttttttccattctccat |
269 |
Q |
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| T |
52080388 |
atattgctgccaaactaatcacattatctgcacttggaaacaaagctaaaccatagatcgtcaaagccaacatatccataaacttttttccattctccat |
52080487 |
T |
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| Q |
270 |
tattagctaaggctttcaacagatcctctaagtactgccttttgataccactggttgtattcatgttttccttacctataagatgggtcatagaattgta |
369 |
Q |
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| T |
52080488 |
tattagctaaggctttcaacagatcctctaagtactgccttttgataccactggttgtattcgtgttttccttacctataaggtgggtcatagaattgta |
52080587 |
T |
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| Q |
370 |
ataagcatgaaagtgcctctatctaaacatctacccttaacaaatccaagatctttc |
426 |
Q |
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| T |
52080588 |
ataagcaggaaagtgcctctatctaaacatccacccttaacaaatccaagatctttc |
52080644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 52078852 - 52079019
Alignment:
| Q |
11 |
cagagagactaaactaatcaatctttggataagcagcgtcgtctctaagattttgaatattgttctgtgtgaagtataaaattggtattcaaattttgta |
110 |
Q |
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| T |
52078852 |
cagagagattaaactaatcaatcttcagataatcagtgtcgtctctaagattttgaatattattgtgtgtgaaatataaaattggtattataattttgta |
52078951 |
T |
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| Q |
111 |
ttaagtaataccacgtacgtacgcacg------ctcatatacacacgtgtgaacacatacttaaaata |
172 |
Q |
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||||||||||||| ||||||||||||| | |||| |||||||||| |||||| |||||||||| |
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| T |
52078952 |
ttaagtaataccatgtacgtacgcacgcacgcacacatacacacacgtgtaaacacacacttaaaata |
52079019 |
T |
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