View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19800_low_13 (Length: 443)

Name: NF19800_low_13
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19800_low_13
NF19800_low_13
[»] chr1 (7 HSPs)
chr1 (1-427)||(36532685-36533111)
chr1 (115-267)||(26304400-26304552)
chr1 (157-279)||(20627474-20627596)
chr1 (8-74)||(20627673-20627739)
chr1 (184-225)||(21535379-21535420)
chr1 (2-63)||(26304598-26304659)
chr1 (315-394)||(36553280-36553364)
[»] scaffold0054 (1 HSPs)
scaffold0054 (157-225)||(18602-18671)
[»] chr7 (2 HSPs)
chr7 (184-225)||(26187799-26187840)
chr7 (151-189)||(38175687-38175725)
[»] chr3 (3 HSPs)
chr3 (157-225)||(27024796-27024865)
chr3 (184-225)||(10494281-10494322)
chr3 (115-151)||(29787855-29787891)
[»] chr2 (2 HSPs)
chr2 (157-225)||(21484834-21484903)
chr2 (87-153)||(20529342-20529408)
[»] chr8 (1 HSPs)
chr8 (170-225)||(21268588-21268643)
[»] scaffold0160 (1 HSPs)
scaffold0160 (157-225)||(16867-16936)
[»] scaffold0001 (1 HSPs)
scaffold0001 (157-225)||(426824-426893)
[»] chr4 (1 HSPs)
chr4 (158-225)||(6404622-6404690)


Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 36532685 - 36533111
Alignment:
Q  1 cttggcattcaagtagcttatctaggcaaagtaaagggatttactagcctctttgagaaaactgggaagaatggggataacacattcacattttctattc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36532685 cttggcattcaagtagcttatctaggcaaagtaaagggatttactagcctctttgagaaaactgggaagaatggggataacacattcacattttctattc 36532784  T
Q  101 caccaaatcaaacttataggttctcacatcaaattccttcattcaagatgagtggggatgaaagggaaggtgttccaagaggctgttttgagtttgatcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36532785 caccaaatcaaacttataggttctcacatcaaattccttcattcaggatgagtggggatgaaagggaaggtgttccaagaggctgttttgagtttgatcc 36532884  T
Q  201 tgctgcattgccaactgagatatttgaagctgaaaaagattcctcaatccctggaagatcaagggaaaaggtttgaataatagtattttaggctaatgag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36532885 tgctgcattgccaactgagatatttgaagctgaaaaagattcctcaatccctggaagatcaagggaaaaggtttgaataatagtatgttaggctaatgag 36532984  T
Q  301 gagtaagagcaccagtattaaaaagtggaggaaagcctttttcctcaagttttgattaaatccattccttaaagatgctactttttctcatgtatatctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36532985 gagtaagagcaccagtattaaaaagtggaggaaagcctttttcctcaagttttgattaaatccattccttaaagatgctactttttctcatgtatatctt 36533084  T
Q  401 tttcttcctacacagcctgtctaatct 427  Q
    |||||||||||||||||||||||||||    
T  36533085 tttcttcctacacagcctgtctaatct 36533111  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 115 - 267
Target Start/End: Complemental strand, 26304552 - 26304400
Alignment:
Q  115 tataggttctcacatcaaattccttcattcaagatgagtggggatgaaagggaaggtgttccaagaggctgttttgagtttgatcctgctgcattgccaa 214  Q
    |||||||||||||||||||| |||||||  ||||||||||| ||||| |||||||||||||| ||||  ||||||||  |||| || |||||  ||||||    
T  26304552 tataggttctcacatcaaatcccttcatataagatgagtggtgatgagagggaaggtgttccgagagattgttttgaacttgaccccgctgccctgccaa 26304453  T
Q  215 ctgagatatttgaagctgaaaaagattcctcaatccctggaagatcaagggaa 267  Q
    || | ||||||||||||||||| || || ||||||  ||||||||||||||||    
T  26304452 cttacatatttgaagctgaaaaggactcatcaatctttggaagatcaagggaa 26304400  T

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Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 20627596 - 20627474
Alignment:
Q  157 gatgaaagggaaggtgttccaagaggctgttttgagtttgatcctgctgcattgccaactgagatatttgaagctgaaaaagattcctcaatccctggaa 256  Q
    ||||||||| ||| |||||||| ||  ||||||||  ||||| |||||||| ||||||| || |||||||||||||||||| |||||||||||| |||||    
T  20627596 gatgaaaggaaagatgttccaaaagattgttttgaacttgatactgctgcactgccaaccgatatatttgaagctgaaaaaaattcctcaatccttggaa 20627497  T
Q  257 gatcaagggaaaaggtttgaata 279  Q
    ||||||||||||| || ||||||    
T  20627496 gatcaagggaaaaagtatgaata 20627474  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 20627739 - 20627673
Alignment:
Q  8 ttcaagtagcttatctaggcaaagtaaagggatttactagcctctttgagaaaactgggaagaatgg 74  Q
    ||||||||||||| ||||||||||| |  || |||| ||||||||||||||||||| ||||||||||    
T  20627739 ttcaagtagcttacctaggcaaagttagagggtttattagcctctttgagaaaactaggaagaatgg 20627673  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 21535420 - 21535379
Alignment:
Q  184 tgttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||||| ||||||||||| ||||||| ||||||||||    
T  21535420 tgttttgagttagatcctgctgccttgccaagtgagatattt 21535379  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 26304659 - 26304598
Alignment:
Q  2 ttggcattcaagtagcttatctaggcaaagtaaagggatttactagcctctttgagaaaact 63  Q
    |||||||| || |||||||  |||| || || || |||||||||||||||||||||||||||    
T  26304659 ttggcattgaaatagcttacttaggaaaggtgaaaggatttactagcctctttgagaaaact 26304598  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 394
Target Start/End: Original strand, 36553280 - 36553364
Alignment:
Q  315 gtattaaaaagtggaggaaagcctttttcctcaag-----ttttgattaaatccattcc-ttaaagatgctactttttctcatgta 394  Q
    ||||||||||||| |||||||||||||||||||||     ||| ||||| ||||||||| || |||| |||||||||||| |||||    
T  36553280 gtattaaaaagtg-aggaaagcctttttcctcaagttgtttttagattatatccattccttttaagaagctactttttctgatgta 36553364  T

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Target: scaffold0054 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 18671 - 18602
Alignment:
Q  157 gatgaaagggaaggtgttccaagaggct-gttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||  |||||||| ||||||| | |||||||||| |||| |||||| ||||||||||||||||||    
T  18671 gatgaaagacaaggtgtttcaagaggattgttttgagttagatcttgctgccttgccaactgagatattt 18602  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 26187840 - 26187799
Alignment:
Q  184 tgttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||||| ||||||||||| ||||||||||||||||||    
T  26187840 tgttttgagttagatcctgctgccttgccaactgagatattt 26187799  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 189
Target Start/End: Complemental strand, 38175725 - 38175687
Alignment:
Q  151 agtggggatgaaagggaaggtgttccaagaggctgtttt 189  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  38175725 agtgaggatgaaagggaaggtgttccaagaggttgtttt 38175687  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Original strand, 27024796 - 27024865
Alignment:
Q  157 gatgaaagggaaggtgttccaagaggctg-ttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||  |||||||| ||||||| |  ||||||||| ||||||||||| ||||||||||||||||||    
T  27024796 gatgaaagacaaggtgtttcaagaggattattttgagttagatcctgctgccttgccaactgagatattt 27024865  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 10494322 - 10494281
Alignment:
Q  184 tgttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||||| |||| |||||| ||||||||||||||||||    
T  10494322 tgttttgagttagatcttgctgccttgccaactgagatattt 10494281  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 29787855 - 29787891
Alignment:
Q  115 tataggttctcacatcaaattccttcattcaagatga 151  Q
    ||||||||||||||||||||||||||||  |||||||    
T  29787855 tataggttctcacatcaaattccttcatataagatga 29787891  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 21484903 - 21484834
Alignment:
Q  157 gatgaaagggaaggtgttccaagaggct-gttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||  |||||||| ||||||| | |||||||||| ||||||||||| ||| ||||||||||||||    
T  21484903 gatgaaagacaaggtgtttcaagaggattgttttgagttagatcctgctgccttgtcaactgagatattt 21484834  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 20529342 - 20529408
Alignment:
Q  87 cacattttctattccaccaaatcaaacttataggttctcacatcaaattccttcattcaagatgagt 153  Q
    |||||||| ||||| ||| ||||||   |||||||||||||||| |||||||||||  |||||||||    
T  20529342 cacattttgtattctaccgaatcaactatataggttctcacatcgaattccttcatataagatgagt 20529408  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 21268643 - 21268588
Alignment:
Q  170 gtgttccaagaggctgttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||| ||||||| ||||||||||| ||||||||||  || |||||||||||||||    
T  21268643 gtgtttcaagaggatgttttgagttagatcctgctgtcttaccaactgagatattt 21268588  T

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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 16936 - 16867
Alignment:
Q  157 gatgaaagggaaggtgttccaagaggct-gttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||  |||||||| ||||||| | |||||||||| |||| |||||| |||||||| |||||||||    
T  16936 gatgaaagacaaggtgtttcaagaggattgttttgagttagatcttgctgccttgccaaccgagatattt 16867  T

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Target: scaffold0001 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 426893 - 426824
Alignment:
Q  157 gatgaaagggaaggtgttccaagaggct-gttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    ||||||||||||||||||  |||||| | |||||||||| |||| || ||| |||||||| |||||||||    
T  426893 gatgaaagggaaggtgtttgaagaggattgttttgagttagatcatgttgccttgccaacagagatattt 426824  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 6404690 - 6404622
Alignment:
Q  158 atgaaagggaaggtgttccaagaggct-gttttgagtttgatcctgctgcattgccaactgagatattt 225  Q
    |||||| | |||||||| ||||||| | |||||||||| |||| |||||| ||||||||||| ||||||    
T  6404690 atgaaatgaaaggtgtttcaagaggattgttttgagttagatcatgctgctttgccaactgacatattt 6404622  T

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