View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_14 (Length: 408)
Name: NF19800_low_14
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 148 - 400
Target Start/End: Complemental strand, 4608087 - 4607839
Alignment:
| Q |
148 |
ttcatatgatatctaatcttaaattcaaaaagtactttcaactcacccaataacaatctaaaaaatcactgtcaaatggttccaacaacaattggaaaac |
247 |
Q |
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| T |
4608087 |
ttcatatgatatctaatcttaaattcaaaaagtactttcaactcacccaataacaatctaaaaaatcactggcaaatggttccaacaacaattggaaaac |
4607988 |
T |
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| Q |
248 |
tttctggaacaatgtgtactattacgtatgaaagatacccactaaaaaacaaagaaacccgtgagctagctagttagaaagagttttcttctagttcaaa |
347 |
Q |
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| T |
4607987 |
tttctggaacaatgtgtactattacgtatgaaagatacccactaaaaaacaaagaaacccgtgag----ctagttagaaagagttttcttctagttcaaa |
4607892 |
T |
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| Q |
348 |
aaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttc |
400 |
Q |
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| T |
4607891 |
aaactcattgagtatagtttcatttcaaaaacccatttgagtatattttcttc |
4607839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 3 - 104
Target Start/End: Complemental strand, 4608233 - 4608132
Alignment:
| Q |
3 |
aaggtaaaaaatccaacagttactaaaacattcaaaatctaaaacacctacatagtaaagagacaagaattagagacaaaacataataacattaatcata |
102 |
Q |
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| T |
4608233 |
aaggtaaaaaatccaacagttactaaaacattcaaaatctaaaacacctacatggtaaagagacaagaattagagacaaaacataataacattaatcata |
4608134 |
T |
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| Q |
103 |
gg |
104 |
Q |
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|| |
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| T |
4608133 |
gg |
4608132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 4608288 - 4608236
Alignment:
| Q |
33 |
ttcaaaatctaaaacacctacatagtaaagagacaagaattagagacaaaaca |
85 |
Q |
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||||||||||||||||||| |||| | |||||||||||||||||||||||||| |
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| T |
4608288 |
ttcaaaatctaaaacaccttcatattgaagagacaagaattagagacaaaaca |
4608236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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