View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_15 (Length: 408)
Name: NF19800_low_15
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_15 |
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| [»] chr4 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 169 - 408
Target Start/End: Complemental strand, 16840781 - 16840542
Alignment:
| Q |
169 |
aactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaagaaaaagtattaagt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16840781 |
aactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaagaaaaagtattaagt |
16840682 |
T |
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| Q |
269 |
gtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggtggttcgtcatggatcagtacttaaaattatnnnnnnntaa |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
16840681 |
gtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggtggttcgtcatggatcagtacttaaaattataaaaaaataa |
16840582 |
T |
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| Q |
369 |
ttcaatgatgatcgacaatactatttagaaataaaaattc |
408 |
Q |
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||||||||||| |||| ||||||||||||||||||||||| |
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| T |
16840581 |
ttcaatgatgaccgacgatactatttagaaataaaaattc |
16840542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 140
Target Start/End: Complemental strand, 16840935 - 16840810
Alignment:
| Q |
15 |
atgaagaaaataataacaacattaaatgtgtttagaagcggagacttagacttcgtcaactatccatactttaaagagcgtttaaggtggattactctta |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16840935 |
atgaagaaaataataacaacattaaatgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagcgtttaaggtggattactctta |
16840836 |
T |
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| Q |
115 |
gcaaggatactttattttatatacgg |
140 |
Q |
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| T |
16840835 |
gcaaggatactttattttatatacgg |
16840810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 169 - 358
Target Start/End: Original strand, 37437948 - 37438133
Alignment:
| Q |
169 |
aactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaagaaaaagtattaagt |
268 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||| || ||||| || ||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
37437948 |
aactaaactacaaaaatttctttaaatttataatttcctcaaagcttattatagcacataagaaaatgcactgagcatataaaaagaaaaagtattaagt |
37438047 |
T |
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| Q |
269 |
gtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggtggttcgtcatggatcagtacttaaaattat |
358 |
Q |
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| T |
37438048 |
gtcatatgata-tcgatactctactattgagttctactgtaaaccacctttataa---gcggttcatcatggatcactaattaaaattat |
37438133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 37699271 - 37699392
Alignment:
| Q |
15 |
atgaagaaaataataacaacattaaatgtgtttagaagcggagacttagacttcgtcaactatccatactttaaagagcgtttaaggtggattactctta |
114 |
Q |
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||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||||| || ||||||||||||||| ||||||||||||||||| |
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| T |
37699271 |
atgaagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagcgttcaaggtggattactctta |
37699370 |
T |
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| Q |
115 |
gcaaggatactttattttatat |
136 |
Q |
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||||||||| |||| ||||||| |
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| T |
37699371 |
gcaaggatattttaatttatat |
37699392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 328
Target Start/End: Original strand, 37705246 - 37705404
Alignment:
| Q |
169 |
aactaaactacaaaaatttctttaaatctataatttattcaaagtttgttataacaaataagaaaatgtactaagcatataaaaagaaaaagtattaagt |
268 |
Q |
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|
||||||||||||||||||||||||||| |||||||| |||||||||||||| | || | ||||||||| | | |||||||||||||||||||||| | | |
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| T |
37705246 |
aactaaactacaaaaatttctttaaatttataatttcttcaaagtttgttacagcacaaaagaaaatgcattgagcatataaaaagaaaaagtatcagat |
37705345 |
T |
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| Q |
269 |
gtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagtggt |
328 |
Q |
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| ||| |||| | ||||||| ||||||| |||||| ||| ||||| ||||||| |||| |
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| T |
37705346 |
gccatcggata-tcgatactcaactcgtgggttctacggtagaccacctttataattggt |
37705404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 358
Target Start/End: Original strand, 37700644 - 37700772
Alignment:
| Q |
226 |
ataagaaaatgtactaagcatataaaaagaaaaagtattaagtgtcataagatatttgatactctactcgtgagttctaaagtaaaccacttttataagt |
325 |
Q |
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||||||||||| ||| |||| |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
37700644 |
ataagaaaatgcactgagcacataaaaagaaaacatattaagtgtcatcggatatt-gatactctactcgtgagttctaccgtagaccacttttataagt |
37700742 |
T |
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| Q |
326 |
ggtggttcgtcatggatcagtacttaaaattat |
358 |
Q |
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||| || ||||| | | |||||||||||||| |
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| T |
37700743 |
ggt---tcatcatgcaccggtacttaaaattat |
37700772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 37704757 - 37704818
Alignment:
| Q |
32 |
aacattaaatgtgtttagaagcggagacttagacttcgtcaactatccatactttaaagagc |
93 |
Q |
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|||||||| ||| ||||||| |||||||||||||||| |||| | | ||||||||||||||| |
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| T |
37704757 |
aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc |
37704818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 37437887 - 37437923
Alignment:
| Q |
98 |
aaggtggattactcttagcaaggatactttattttat |
134 |
Q |
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| T |
37437887 |
aaggtggattactcttggcaaggatactttattttat |
37437923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 408
Target Start/End: Complemental strand, 35711326 - 35711298
Alignment:
| Q |
380 |
tcgacaatactatttagaaataaaaattc |
408 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
35711326 |
tcgacaatactatttagaaataaaaattc |
35711298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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