View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_16 (Length: 402)
Name: NF19800_low_16
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 62 - 288
Target Start/End: Complemental strand, 31464850 - 31464624
Alignment:
| Q |
62 |
tataacccaacaatcaagtttctaaaatattagtatctcttcaatatagtattgaaagtatgtaaaataataagtaatctctaaaatacataaaataaat |
161 |
Q |
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| T |
31464850 |
tataacccaacaatcaagtttctaaaatatcagtatctcttcaatatagtattgaaagtatgtaaaataataattaatctctaaaatacataaaataaat |
31464751 |
T |
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| Q |
162 |
cattttaggagtgactttggatgatatatgtaattttagatagtgattcaaatttttaaagaaaaatttattgtgtggaatataaatttgaagagttttt |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31464750 |
cattttaggagtgactttggatgatatatgtaattttagatagtgattcaaatttttaaagaaaaatttattgtgtggaatataaatttgaagagttttt |
31464651 |
T |
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| Q |
262 |
aaaatgaaagattttaagaagtatctt |
288 |
Q |
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| T |
31464650 |
aaaatgaaagattttaagaagtatctt |
31464624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 31464607 - 31464551
Alignment:
| Q |
273 |
ttttaagaagtatcttgtcaaaactaaattgggataatttcaagtagaacctaaaca |
329 |
Q |
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| T |
31464607 |
ttttaagaagtatcttgtcaaaactaaattgggataatttcaagtagaacctaaaca |
31464551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 44572158 - 44572090
Alignment:
| Q |
247 |
atttgaagagtttttaaaatgaaagattttaagaagtatcttgtcaaaactaaattgggataatttcaa |
315 |
Q |
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| T |
44572158 |
atttgaagaatttttaaaatgaaggattttatgaaatgttttgtcaaaattaaatttgaagaatttcaa |
44572090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 6865983 - 6865916
Alignment:
| Q |
228 |
tttattgtgtggaatataaatttgaagagtttttaaaatgaa-agattttaagaagtatcttgtcaaa |
294 |
Q |
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|||||||| |||| ||||||||||||| |||||||||||| |||||||| ||||||| |||||||| |
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| T |
6865983 |
tttattgtttggatgataaatttgaagaacttttaaaatgaagagattttatgaagtattttgtcaaa |
6865916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 1797702 - 1797644
Alignment:
| Q |
243 |
ataaatttgaagagtttttaaaatgaa-agattttaagaagtatcttgtcaaaactaaa |
300 |
Q |
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|||||||| |||| ||||||||||||| |||||||| ||||||| |||||| ||||||| |
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| T |
1797702 |
ataaatttcaagaatttttaaaatgaagagattttatgaagtattttgtcacaactaaa |
1797644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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