View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_17 (Length: 371)
Name: NF19800_low_17
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 39940726 - 39940381
Alignment:
| Q |
17 |
actttggactttctttttggataaggtaaccttttgtgcaaagcaatatagcaaaacatcctccataaggagcaatataccttactccaaaacagatcat |
116 |
Q |
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| T |
39940726 |
actttggactttctttttggataaggtaaccttttgtgcaaagcaatatagcaaaacatcctccataaggagcaatataccttactccaaaacagatcct |
39940627 |
T |
|
| Q |
117 |
ttatttttgcgttacattattgctatttgctatgcatgtatttgtcaatttcttgagacaaaatgcttatattaatgttaagatcaaagaaatcaaatta |
216 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39940626 |
ttatttttgcattacattattgctatttgctatgcatgtatttgtcaatttcttgagacaaaatgcttatattaatgttaagatcaaagaaatcaaattg |
39940527 |
T |
|
| Q |
217 |
ctttatagtacaatttttcattatttatgtcaaaatcaaataataagaaggnnnnnnnnnntgtgtttaaatttttaatacaagcaagcatacattatat |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
39940526 |
ctttatagtacaatttttcattatttatgtcaaaatcaaataataagaaggaaacaaaaaatgtgttttaatttttaatacaagcaagcatacattatat |
39940427 |
T |
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| Q |
317 |
agtggttaacattatacaccattttgaattattctattgcctttgc |
362 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39940426 |
agtggttaacattatacaccattttgaattattctatcgcctttgc |
39940381 |
T |
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