View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_18 (Length: 355)
Name: NF19800_low_18
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 7e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 7712999 - 7713149
Alignment:
| Q |
1 |
atattacacacttaaaacaatacttaattttagataagtagaaaaactgttgtcgttagctattacaaaccattattaaacgatctagatctttaaacaa |
100 |
Q |
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| T |
7712999 |
atattacacacttaaaacaatacttaattttagataagtagaaaaactgttgtcgttagctattacaaaccattattaaacgatgtagatctttaaacag |
7713098 |
T |
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| Q |
101 |
tatttccataatttattataccattttcattcggcgtgaactcgtttcaatc |
152 |
Q |
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| T |
7713099 |
tatttcca-aatttattataccattttcattcggcgtgaactcgtttcaatc |
7713149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 179 - 287
Target Start/End: Original strand, 7713146 - 7713251
Alignment:
| Q |
179 |
aatccaaaatttactatacaagttttgctactatatttaccatgtattttaatcttagatataaaaatgtggctaaaattattatttggggaaatttaga |
278 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7713146 |
aatccaaaatttactatacaagttttgctactat--ttaccatgtattt-aatcttagatataaaaatgtggctaaaattattatttggggaaatttaga |
7713242 |
T |
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| Q |
279 |
aaatttgaa |
287 |
Q |
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||||||||| |
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| T |
7713243 |
aaatttgaa |
7713251 |
T |
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