View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_19 (Length: 353)
Name: NF19800_low_19
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 3348482 - 3348805
Alignment:
| Q |
10 |
aatatgtacggaccacaaaagaagcttcaaaggtaaaccatcactaattttagtaaannnnnnnnnnnnnncacatccattctcctttttaaattcatat |
109 |
Q |
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| T |
3348482 |
aatatgtatggaccacaaaagaagcttcaaaggtaaaccatcactaattttagtaa------gatatatatcacatccattctcctttttaaattcatat |
3348575 |
T |
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| Q |
110 |
tataaaatttggacccacttttagattcatattagaaaatttgtaaaatttaattttagttctcacgaaatatttgttcattttagctagtttatagcac |
209 |
Q |
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| T |
3348576 |
tataaaatttggacccacttttagattcatattagaaaatttgtaaaatttaattttagttctcacgaaatatttgttcattttagctagtttatagcac |
3348675 |
T |
|
| Q |
210 |
atataataaggagaattctgtgttatcctagagaaaaaatgggtacaaaataatagtcatgaagagagccctaaaatattcgagagtcgtcacattgaat |
309 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3348676 |
atataataaggagaattctatgttatcctagagaaaaaatgggtacaatataatagtcatgaagagagccctaaaatattcgaaagtcgtcacattgaat |
3348775 |
T |
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| Q |
310 |
tttgagcaatcacacaagaattgtaaaact |
339 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3348776 |
tttgagcaatcacacaagaattgtaaaact |
3348805 |
T |
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