View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_2 (Length: 683)
Name: NF19800_low_2
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 17 - 665
Target Start/End: Complemental strand, 10344497 - 10343849
Alignment:
| Q |
17 |
ataaccacaaaatcctcgttttcagaacattttttgttttatataacttctcaaaatactttcaaacttaactagctagttcaaatattttcaaatgctt |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10344497 |
ataaccaccaaatcctcgttttcagaacattttttgttttgtaaaacttctcaaaatactttcaaacttaactagctagttcaaatattttcaaatgctt |
10344398 |
T |
|
| Q |
117 |
tgacgatagag--taaaataggacnnnnnnncaaactatttttaaagatatttccgtcaaaccgtatcaaagaaaatgcattgggtaatatctatgagat |
214 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10344397 |
tgacgatagagagtaaaataggactttttttcaaactatttttaaagatatttccgtcaaaccgtatcaaagaaaatgcattgggtaatatctttgagat |
10344298 |
T |
|
| Q |
215 |
aatcagaaactatatcaagtgataacaagcaacattacaacacatcagcttcccaccttttctttcaaacttttcttaactgatcaatgcaatcacgtaa |
314 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10344297 |
aatcaaaaactatatcaagtgataacaagcaacattacaacacatcagcttcccaccttttctttcaaactcttcttaactgatcaatgcaatcacgtaa |
10344198 |
T |
|
| Q |
315 |
cttactagaactgctactactaaaaataaaagtaagattaattgccagtttcacactaattaggatataaacaattttggcctagaggtgatcctaaaag |
414 |
Q |
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|||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10344197 |
cttactagaactgctaatactaaaaatgaaagtaagattaattgcc-gtttcacactaattaggatataaacaattttggcctagaggtgatcctaaaag |
10344099 |
T |
|
| Q |
415 |
attatgttttcaataaccgactcatcaaagtagtaaaagcttcgcacatgctatgaacatatttttgttataactaaataattgttggatacaggaaatt |
514 |
Q |
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| T |
10344098 |
attatgttttcaataaccgactcatcaaagtagtaaaagcttcgcacatgctatgaacatatttttgttataactaaataattgttggatacaggaaatt |
10343999 |
T |
|
| Q |
515 |
aaccaaagaaaggtaaaatatgcaaatgctccgaaagtataaaactgaatccaaagaaatgaannnnnnnggagggggtatggtgctatcttctctttga |
614 |
Q |
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| T |
10343998 |
aaccaaagaagggtaaaatatgcaaatgctccgaaagtataaaactgaatccaaagaaatgaa-ttttttggagggggtatggtgctatcttctctttga |
10343900 |
T |
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| Q |
615 |
tggtccgcagcccccaagcacaagactaacacttaggcgaagtgactgatc |
665 |
Q |
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|||||| ||||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
10343899 |
tggtccacagcccccaagcatgagactatcacttaggtgaagtgactgatc |
10343849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 10346413 - 10346368
Alignment:
| Q |
46 |
ttttttgttttatataacttctcaaaatactttcaaacttaactag |
91 |
Q |
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||||||||||| || |||||||||| | |||||||||||||||||| |
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| T |
10346413 |
ttttttgttttgtaaaacttctcaatacactttcaaacttaactag |
10346368 |
T |
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