View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_28 (Length: 254)
Name: NF19800_low_28
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_28 |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (2 HSPs) |
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Alignment Details
Target: scaffold0451 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 6543 - 6793
Alignment:
| Q |
10 |
ataattctcaaacaaccaaaaatgatatttaaaaatacccaaatcac----aaaggcaattattttgaatttcaaagcacactccattatgtgtaaaata |
105 |
Q |
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| T |
6543 |
ataattctcaaacaaccaaaaatgatatttaaaaatacccaaatcatttagaaaggaaattattttgaatttcaaagcacactccattatgtgtaaaatc |
6642 |
T |
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| Q |
106 |
taattgagaaaacaaatgacaacttatttgtctacaaatatttttcaaacataaattgcaatgtcaactacatttg---nnnnnnnaacttagagacgat |
202 |
Q |
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| T |
6643 |
-aattgagaaaacaaatgacaacttatttgtctacaaatatttttcaaacataaattgcaatgtcaactacatttgttttttttttaacttagagacgat |
6741 |
T |
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| Q |
203 |
aaacagggattgcaatcaaatgtttggctctaggcatagtaacaccaaatga |
254 |
Q |
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| T |
6742 |
aaacagggattgcaattagatgattggctctaggcatagtaacaccaaatga |
6793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 27 - 253
Target Start/End: Complemental strand, 27413874 - 27413644
Alignment:
| Q |
27 |
aaaaatgatatttaaaaatacccaaatcac----aaaggcaattattttgaatttcaaagcacactccattatgtgtaaaatataattgagaaaacaaat |
122 |
Q |
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| T |
27413874 |
aaaaataaaatttaaaaatactcaaatcatttaaaaagccaattattttgaatttcatagcacactccattatgtgtaaaatataattgagaaaacaaat |
27413775 |
T |
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| Q |
123 |
gacaacttatttgtctacaaatatttttcaaacataaattgcaatgtcaactacatttgnnnnnnnaacttagagacgataaacagggattgcaatcaaa |
222 |
Q |
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| T |
27413774 |
gacaacttatttgtctacaaatatttttcaaacataaattgcaatgtcaactacattgctctttttaacttaaagacgataaacaggaagtgcaatcaaa |
27413675 |
T |
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| Q |
223 |
tgtttggctctaggcatagtaacaccaaatg |
253 |
Q |
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| T |
27413674 |
tgattggctctaggcatagtaataccaaatg |
27413644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 7144 - 7089
Alignment:
| Q |
198 |
acgataaacagggattgcaatcaaatgtttggctctaggcatagtaacaccaaatg |
253 |
Q |
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| T |
7144 |
acgataaacagggattgcaattagatgattggctctacgcatagtaacaccaaatg |
7089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 7368 - 7307
Alignment:
| Q |
119 |
aaatgacaacttatttgtctacaaatatttttcaaacataaattgcaatgtcaactacattt |
180 |
Q |
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|||| ||||||||||| ||||||||| || ||||||||||||||| ||| ||||| |||||| |
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| T |
7368 |
aaattacaacttatttttctacaaatcttgttcaaacataaattgaaatttcaacgacattt |
7307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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