View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_29 (Length: 250)
Name: NF19800_low_29
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_29 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1739030 - 1738782
Alignment:
| Q |
1 |
tagtttgtgagaattttatatgcaagagcttaataattattgccgatgaggcgaggtataggtatgatttatttatgaactcactgagatgtattttcat |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||||||| |||| |
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| T |
1739030 |
tagttagtgagaattttatatgcaagagcttaataattattgtcgatgaggcgaggtacaagtatgatttatttatgaattcactgagatgtattctcat |
1738931 |
T |
|
| Q |
101 |
tccaattagtttgcatgtttacggataagtgaactgataaagccatggcgaaggagacttgaggagttattcga---------ctttctcttagtttcgt |
191 |
Q |
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| T |
1738930 |
tccaattagtttgcatgtttacagataagtgaactgataaatccaaggcgaaggagacttgaggagttgttcgacgtggcagcctttctcttagtttcgt |
1738831 |
T |
|
| Q |
192 |
ttacttttattcattaatactttgaagtaggtgatttggtactcctttg |
240 |
Q |
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|||||||||||| |||||||||||||||| |||| |||||||||||||| |
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| T |
1738830 |
ttacttttattcgttaatactttgaagtacgtgacttggtactcctttg |
1738782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 5542275 - 5542150
Alignment:
| Q |
124 |
gataagtgaactgataaagccatggcgaaggagacttgaggagttattcgac---------tttctcttagtttcgtttacttttattcattaatacttt |
214 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
5542275 |
gataagtgaactgataaagccaaggcgatggagacttgaggagttgttcgacgtggcagcctttctcttagtttcgtttacttttattcgttaatacttt |
5542176 |
T |
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| Q |
215 |
gaagtaggtgatttggtactcctttg |
240 |
Q |
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| T |
5542175 |
gaagtacgtgatttgatactcctttg |
5542150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 32 - 239
Target Start/End: Original strand, 18353830 - 18354046
Alignment:
| Q |
32 |
aataattattgccgatgaggcgaggtataggtatgatttatttatgaactcactgagatgtattttcattccaattagtttgcatgtttacggataagtg |
131 |
Q |
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| T |
18353830 |
aataattattgccgatgaggcgaggtataggtatgatttatttatgaactcactgagatgtattctcattccaattagtttgcatgtttacggataagtg |
18353929 |
T |
|
| Q |
132 |
aactgataaagccatggcgaaggagacttgaggagttattcga---------ctttctcttagtttcgtttacttttattcattaatactttgaagtagg |
222 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
18353930 |
aactgataaagccaaggcgaaggagacttgaggagttgttcgacgtggcagcctttctcttagtttcgtttacttttattcattaatactttgaagtacg |
18354029 |
T |
|
| Q |
223 |
tgatttggtactccttt |
239 |
Q |
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| T |
18354030 |
taatttgggactccttt |
18354046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 66435 - 66271
Alignment:
| Q |
10 |
agaattttatatgcaagagcttaataattattgccgatgaggcgaggtataggtatgatttatttatgaactcactgagatgtattttcattccaattag |
109 |
Q |
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||||||||||||||| || |||| || ||||||| || | || || ||||| |||||||||||||||||| ||| ||||||||||| | ||||||||||| |
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| T |
66435 |
agaattttatatgcaggaactta-tatttattgcagaagcggtgaagtataagtatgatttatttatgaattcaatgagatgtattcttattccaattag |
66337 |
T |
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| Q |
110 |
tttgcatgtttacggataagtgaactgataaagccatggcgaaggagacttgaggagttattcgac |
175 |
Q |
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| T |
66336 |
tttgcatgtctacagataagtgaacgggtaaagccaaggcgaaggagacttgaatagttgttcgac |
66271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 124 - 240
Target Start/End: Complemental strand, 18863805 - 18863680
Alignment:
| Q |
124 |
gataagtgaactgataaagccatggcgaaggagacttgaggagttattcga---------ctttctcttagtttcgtttacttttattcattaatacttt |
214 |
Q |
| |
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||||||||||||| |||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||| ||| |
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| T |
18863805 |
gataagtgaactggtaaagccaaggcgaaggagacttgaggagttgttcgacatggcagcctttctcttagtttcgtttacttctattcgttaataattt |
18863706 |
T |
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| Q |
215 |
gaagtaggtgatttggtactcctttg |
240 |
Q |
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| T |
18863705 |
gaagtacatgacttggtacttctttg |
18863680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 124 - 239
Target Start/End: Complemental strand, 18868953 - 18868831
Alignment:
| Q |
124 |
gataagtgaactgataaagccatggcgaaggagacttgaggagttattcgactt-------tctcttagtttcgtttacttttattcattaatactttga |
216 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||| ||||| | | ||||||||||||||| || |||| |||||| ||||| |
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| T |
18868953 |
gataagtgaactggtaaagccaaggcgaaggagacttgaggagttgttcgatgtggcaacctttcttagtttcgtttatttctatttgttaataatttga |
18868854 |
T |
|
| Q |
217 |
agtaggtgatttggtactccttt |
239 |
Q |
| |
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|||| |||| || |||||||||| |
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| T |
18868853 |
agtacgtgacttagtactccttt |
18868831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 43278236 - 43278355
Alignment:
| Q |
130 |
tgaactgataaagccatggcgaaggagacttgaggagttattc---------gactttctcttagtttcgtttacttttattcattaatactttgaagta |
220 |
Q |
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|||||||||||||||| |||||||||||||||||||||| ||| | |||||| ||||||| ||||||||||||| |||||| ||||||||| |
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| T |
43278236 |
tgaactgataaagccaaggcgaaggagacttgaggagttgttcaacgtggcagcctttcttttagttttgtttacttttatttgttaataatttgaagta |
43278335 |
T |
|
| Q |
221 |
ggtgatttggtactcctttgc |
241 |
Q |
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|||| || |||||||||||| |
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| T |
43278336 |
tgtgactt-gtactcctttgc |
43278355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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