View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_33 (Length: 239)
Name: NF19800_low_33
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34692265 - 34692051
Alignment:
| Q |
1 |
tgacatattagaagttgaaaaaatcagacttccccattatgaaatgaccctcagaattacgaaaacaaattccatatgacaacattgttgtgaaaaattg |
100 |
Q |
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| T |
34692265 |
tgacatattagaagttgaaaaaatcagacttccccattatgaaatgaccctcataa-------agcagattccatatgacaacattgttgtgaaaaattg |
34692173 |
T |
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| Q |
101 |
cggcgtccacattacattttatcacacctggaggcggtttggaccatggtataagttgattccagtttggcatctgcaatttagctatttgcatgcaaga |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34692172 |
cggcgtccacatcacattttatcacacctggaggcggtttggaccatggtataagttgattccagtttggcatctgcaatttagctatttgcatgcaaga |
34692073 |
T |
|
| Q |
201 |
ccgttcatacagtgtgtccttt |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
34692072 |
ccgttcatacagagtgtccttt |
34692051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 33703960 - 33704161
Alignment:
| Q |
1 |
tgacatattagaagttgaaaaaatcagacttccccattatgaaatgaccctcagaattacgaaaacaaattccata-----tgacaacattgttgtgaaa |
95 |
Q |
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| T |
33703960 |
tgacatattagaagttgaaaaa-tcagacttccctattatgaaatgactctca--attacgaaaacaaatttcataaccggtgataacattgtcgtggaa |
33704056 |
T |
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| Q |
96 |
aattgcggcgtccacattacattttatcacacctggaggcggtttggaccatggtataagttgattccagtttggcatctgcaatttagctatttgcatg |
195 |
Q |
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| T |
33704057 |
aattgcggcgtccacgttacattttgtcacacttgaaggcggttttgaccatgttgtaagttgattccgatttggca--tgcaatttagctctttgcatg |
33704154 |
T |
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| Q |
196 |
caagacc |
202 |
Q |
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||||||| |
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| T |
33704155 |
caagacc |
33704161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 7830275 - 7830396
Alignment:
| Q |
1 |
tgacatattagaagttgaaaaaatcagacttccccattatgaaatgaccctcagaattacgaaaacaaattc----catatgacaacattgttgtgaaaa |
96 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| ||| |
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| T |
7830275 |
tgacatattagaagttgaaaaa-tcaaacttccccattatgaaatgaccctcagaattacgaaaactgattcataaccgatgacaacattgttgtggaaa |
7830373 |
T |
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| Q |
97 |
attgcggcgtccacattacattt |
119 |
Q |
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|||| ||||||||| ||| |||| |
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| T |
7830374 |
attgtggcgtccacgttatattt |
7830396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 28795962 - 28795913
Alignment:
| Q |
5 |
atattagaagttgaaaaaatcagacttccccattatgaaatgaccctcaga |
55 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28795962 |
atattagaagttgaaaaa-tcagacttccccattatgaaatgaccctcaga |
28795913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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