View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_34 (Length: 238)
Name: NF19800_low_34
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_34 |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 1739090 - 1739311
Alignment:
| Q |
1 |
aataacaaagtttatctctaatggagaacttgatcatcaacacaaccctttacattaaggtattctcatcatttaattatctgtgcgtattgcaaaagtc |
100 |
Q |
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| T |
1739090 |
aataacaaagtttatatctacaagagaacttgaccatcaacacaaccctttacattaaggtattatcatcatttagttatatgtgcgtattgcaaaagtc |
1739189 |
T |
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| Q |
101 |
cacccgagcatgattgtacctaggtggttgccaaccggtaaggtagactaataaatcataaatggctccccatttatctgcccttactgaacatacatag |
200 |
Q |
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| T |
1739190 |
cacccgagcatgagtgtacttagatggttgccaaccgataagttagactaataaatcataaatgacgccccatttacctgcacttatcgaacatacttaa |
1739289 |
T |
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| Q |
201 |
gatatcccatgtgttttgggat |
222 |
Q |
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| T |
1739290 |
gacatcccatgtgttttgggat |
1739311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 219
Target Start/End: Original strand, 66510 - 66722
Alignment:
| Q |
7 |
aaagtttatctctaatggagaacttgatcatcaacacaaccctttacattaaggtattctcatcatttaattatctgtgcgtattgcaaaagtccacccg |
106 |
Q |
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|||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||| |||| ||||||||||||||||||| |
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| T |
66510 |
aaagtttatctctactaaagaacttgatcatcaacacaacccttttcattaaggtattcacatcatttacttatatgtgtgtattgcaaaagtccaccca |
66609 |
T |
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| Q |
107 |
agcatgattgtacctaggtggttgccaaccggtaaggtagactaataaatcataaatggctccccatttatctgcccttactgaacatacataggatatc |
206 |
Q |
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| T |
66610 |
aacgtgaatgtacttaggtggttgtcaaccggtaaggtagactaataagtcgtaaatggcgccccatttacctgcccttaccaaacatatttaagatatc |
66709 |
T |
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| Q |
207 |
ccatgtgttttgg |
219 |
Q |
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| T |
66710 |
ccatgtgttttgg |
66722 |
T |
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