View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_35 (Length: 238)
Name: NF19800_low_35
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_35 |
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| [»] scaffold0451 (1 HSPs) |
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| [»] scaffold0638 (1 HSPs) |
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Alignment Details
Target: scaffold0451 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0451
Description:
Target: scaffold0451; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6777 - 6999
Alignment:
| Q |
1 |
atagtaacaccaaatgattccgtcatgtccaagtcacttggtaacaaatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaac |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6777 |
atagtaacaccaaatgattctgtcatgtccaagtcacttggtaacatatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaac |
6876 |
T |
|
| Q |
101 |
gcaccatagttagacctaattgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtgttgccctccaacatctatgttgtttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6877 |
gcaccatagttagacctaattgcaatccaggacatccccttcttccagagccaaatggtataagatgaaagtgttgccctccaacatctatgttgtttcc |
6976 |
T |
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| Q |
201 |
ttcaaatctctcaggccaaaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6977 |
ttcaaatctctcaggccaaaact |
6999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0638 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: scaffold0638
Description:
Target: scaffold0638; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 7104 - 6882
Alignment:
| Q |
1 |
atagtaacaccaaatgattccgtcatgtccaagtcacttggtaacaaatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaac |
100 |
Q |
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|||||||||||||||| || | ||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7104 |
atagtaacaccaaatgcctctgccatgtccaaatcacttggtaacatatgattaggcaatttaaaatcaaagcaatgcacaagttgggctaccaccaaac |
7005 |
T |
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| Q |
101 |
gcaccatagttagacctaattgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtgttgccctccaacatctatgttgtttcc |
200 |
Q |
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| T |
7004 |
gcaccatagttagacccaattgcaatccaggacatccccttcttccagagctaaatggtataagttgaaaatcatgtcctccaacatctatgttgtttcc |
6905 |
T |
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| Q |
201 |
ttcaaatctctcaggccaaaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6904 |
ttcaaatctctcaggccaaaact |
6882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27413659 - 27413437
Alignment:
| Q |
1 |
atagtaacaccaaatgattccgtcatgtccaagtcacttggtaacaaatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaac |
100 |
Q |
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||||||| |||||||| || ||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||| |||||| ||| |||||| |
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| T |
27413659 |
atagtaataccaaatgcctcagtcatgtccaaatcacttggtaacatatcattaggtaatttcaaatcaaagcaatgcacaatttgggccaccaccaaac |
27413560 |
T |
|
| Q |
101 |
gcaccatagttagacctaattgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtgttgccctccaacatctatgttgtttcc |
200 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
27413559 |
gcaccatagttagacccaaatgcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtcatgtcctccaacatctatgttgtttcc |
27413460 |
T |
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| Q |
201 |
ttcaaatctctcaggccaaaact |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
27413459 |
ttcaaatctctcaggccaaaact |
27413437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 38263262 - 38263062
Alignment:
| Q |
22 |
gtcatgtccaagtcacttggtaacaaatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaacgcaccatagttagacctaatt |
121 |
Q |
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||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||| || ||| ||||||| | || |||||| ||||||| |
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| T |
38263262 |
gtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttaggcctaatt |
38263163 |
T |
|
| Q |
122 |
gcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtgttgccctccaacatctatgttgtttccttcaaatctctcaggccaaaa |
221 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||| |||||||| | | |||| ||||||||| ||| || ||||||||||||| |||||||| |
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| T |
38263162 |
gcaatccaggacaaccccttctaccagacccaaatggtatgagctgaaaatcacgtcctctaacatctatattgctttcttcaaatctctctggccaaaa |
38263063 |
T |
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| Q |
222 |
c |
222 |
Q |
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| T |
38263062 |
c |
38263062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 38260291 - 38260090
Alignment:
| Q |
22 |
gtcatgtccaagtcacttggtaacaaatcattaggcaatttaaaatcaaagcaatgcacaagttgggctaccgccaaacgcaccatagttagacctaatt |
121 |
Q |
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||||| ||||| ||||||||||||| || |||||||||||| |||||||||||||||||||||| || ||| ||||||| | || |||||||||||||| |
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| T |
38260291 |
gtcatatccaaatcacttggtaacatatgattaggcaatttccaatcaaagcaatgcacaagttgagccaccaccaaacgaatcacagttagacctaatt |
38260192 |
T |
|
| Q |
122 |
gcaatccaggacaaccccttcttccagagccaaatggtataagctgaaagtgttgccctccaacatctatgttgtttccttcaaatctctcaggccaaaa |
221 |
Q |
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| |||||||||||||| ||||| || |||||||||||||| |||||||| | | ||| ||||||||| |||||||||||||| ||||| |||||||| |
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| T |
38260191 |
gtaatccaggacaacctcttctacctgagccaaatggtatgagctgaaaatcacgtcctttaacatctatattgtttccttcaaacctctctggccaaaa |
38260092 |
T |
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| Q |
222 |
ct |
223 |
Q |
| |
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|| |
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| T |
38260091 |
ct |
38260090 |
T |
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