View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_38 (Length: 227)
Name: NF19800_low_38
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 16840564 - 16840372
Alignment:
| Q |
17 |
atactatttagaaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgtttgttcagagctacaaataattttacattct |
116 |
Q |
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| T |
16840564 |
atactatttagaaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgtttgttcggagctacaaataattttacattct |
16840465 |
T |
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| Q |
117 |
cccccgtgacatttaacattgttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatcttaacat |
209 |
Q |
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| T |
16840464 |
cccccgtgacatttaacattgttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatcttaacat |
16840372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 129 - 205
Target Start/End: Complemental strand, 16840378 - 16840302
Alignment:
| Q |
129 |
ttaacattgttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatctta |
205 |
Q |
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| T |
16840378 |
ttaacattgttgcattcccataaccggattcaaactcacgacatctggttaagctggaagagatcactttcatctta |
16840302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 37700805 - 37700994
Alignment:
| Q |
17 |
atactatttagaaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgtttgttca-gagctacaaataattttacattc |
115 |
Q |
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| T |
37700805 |
atactatttagaaataaaaacttatgatgttttttatatttacgattaagatggtgacttgattgatgtttaagaacgagctacaaataattttacattc |
37700904 |
T |
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| Q |
116 |
tcccccgtgacatttaacattgttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatctta |
205 |
Q |
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| T |
37700905 |
tcccccataaaatttaacatggttgcattcccataactgaattcaaactcacgacatccggttaagctggaagatatcactttcatctta |
37700994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 37438159 - 37438350
Alignment:
| Q |
18 |
tactatttagaaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgtttgttcag----agctacaaataattttacat |
113 |
Q |
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||||||| | ||||||||| |||||||||||| ||||||| ||||||||||| ||||||||||| ||| ||||||| ||||| ||||||||||||| |
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| T |
37438159 |
tactattcaaaaataaaaactcatgatgtttcctatatttgcgactaagacggtgacttgattggtgtatgttcagtgcgagctaataataattttacat |
37438258 |
T |
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| Q |
114 |
tctcccccgtgacatttaacattgttgcattctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatctta |
205 |
Q |
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| T |
37438259 |
tctcccacatgagatttaacattgttacattcccagagttggattcaaactcacgacatctgattaggctggaagaggtcactttcatctta |
37438350 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 46 - 205
Target Start/End: Original strand, 37705420 - 37705583
Alignment:
| Q |
46 |
tttcttatatttacgactaagacgatgacttgattgatgtttgttcag----agctacaaataattttacattctcccccgtgacatttaacattgttgc |
141 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||| | |||||||||||||| ||| |||||||||| |||| |
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| T |
37705420 |
tttcttatatttacgactaagtgggtgacttgattgatgtttgttcagtgcaagctacaaaacaaattacattctcccccatgatatttaacattattgc |
37705519 |
T |
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| Q |
142 |
attctcagaaccggattcaaactcacggcatctggttaagctggaagagatcactttcatctta |
205 |
Q |
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||||| ||||| |||||||||||||| ||||| |||||| || |||||||||||||| ||||| |
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| T |
37705520 |
attcttagaactagattcaaactcacgacatctagttaagttgtaagagatcactttcgtctta |
37705583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 8031478 - 8031409
Alignment:
| Q |
16 |
aatactatttagaaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgt |
85 |
Q |
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|||| ||||||||||| | || |||||||||||||||||||||||||| ||||||||| || |||||||| |
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| T |
8031478 |
aatattatttagaaattataactcatgatgtttcttatatttacgacttagacgatgatttaattgatgt |
8031409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 35711321 - 35711252
Alignment:
| Q |
16 |
aatactatttagaaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgt |
85 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||| | ||||||| ||||||||||| |||| |
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| T |
35711321 |
aatactatttagaaataaaaattcatgacccttctcatatttatggctaagacaatgacttgattaatgt |
35711252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 2724532 - 2724487
Alignment:
| Q |
47 |
ttcttatatttacgactaagacgatgacttgattgatgtttgttca |
92 |
Q |
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|||| |||||||||||||||| || ||||| ||||||||||||||| |
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| T |
2724532 |
ttctcatatttacgactaagatgacgacttaattgatgtttgttca |
2724487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 24647880 - 24647823
Alignment:
| Q |
28 |
aaataaaaattcatgatgtttcttatatttacgactaagacgatgacttgattgatgt |
85 |
Q |
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||||||||| | ||||| ||||| ||||||| |||||||||| ||| ||||||||||| |
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| T |
24647880 |
aaataaaaacttatgatatttctcatatttaagactaagacggtgatttgattgatgt |
24647823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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