View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_4 (Length: 670)
Name: NF19800_low_4
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 5 - 651
Target Start/End: Complemental strand, 960528 - 959881
Alignment:
| Q |
5 |
agtataatactgctttctctttagagtagctccaaaactcagcttcacataaagggttacaattatacttttaatccaacaataaattgatttaaatggt |
104 |
Q |
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| T |
960528 |
agtataatactgctttctctttagagaagctccaaaactcaacttcatataaatggttaca-ttatacttttaatccaacaataaattggtttaaatggt |
960430 |
T |
|
| Q |
105 |
aagagattagagctccttaaataagtggttagagttcaatttccagctcttgcatatgaaaaaatcggttgagatgagagaacttatcttatgtgtgtga |
204 |
Q |
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||||||||||||||||||||| |||||||||| ||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||| | | |
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| T |
960429 |
aagagattagagctccttaaacaagtggttagggttcaatcttcagctcttgcatatgaaaaaatggattgagatgagagaacttatcttatgtgtctca |
960330 |
T |
|
| Q |
205 |
catatcctctgatagagattaataatcattgttaaccaatggtaaaaacttcgtacatagtaaaaattgattgagataggagaactcatcttacgtgtat |
304 |
Q |
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| T |
960329 |
catatcctcggatagagattaataatcattgttaaccaacggtaaaaacttcgtacatagtaaaaatcgattgagatgggagaactcatcttacatgtat |
960230 |
T |
|
| Q |
305 |
gatttatagaaagtgaatactcacacatatgacaaaatcatgtttagaattctaaaatcatgtttacctctcatagaaagtgaatccaatcatataatta |
404 |
Q |
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| T |
960229 |
gatttatggaaagtgaatactcacacatatgacaaaatcatgtttagaattctaaaatcatgtttacctctcatagaaagtgaatccaatcatataatta |
960130 |
T |
|
| Q |
405 |
atcaattttacaaaataaaattgattagaaatcatgtttaacaaatgtttaaccaaaacacacttaggatcatgatgacaagtgtttgaaaaccaca--- |
501 |
Q |
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| T |
960129 |
atcaattttacaaaataaaattcattagaaatcatgtttaacaaatgtttaactaaaacacacttaggatcatgatgacaagtgtttgaaaaccacaacc |
960030 |
T |
|
| Q |
502 |
---------agagaagtacaaaacccctcttatcttattactttgcttcaccaattattgagctaagttgtaaaaagcatgctttcaccacgtttttggt |
592 |
Q |
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| T |
960029 |
cttacccttagagaagtacaaaacccctcttatcttattactttgcttcaccaattattgagctaagttgtgaaaagcatgctttcaccacgtttatggt |
959930 |
T |
|
| Q |
593 |
g-aacatgtgggatggtaatgtgaagattattcaaagtgggggagtgtgtcgatcacacc |
651 |
Q |
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| T |
959929 |
gaaacatgtgggatggta-----------attcaaagtgggggagtgtgtcgatcacacc |
959881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 5632889 - 5632921
Alignment:
| Q |
80 |
ccaacaataaattgatttaaatggtaagagatt |
112 |
Q |
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| T |
5632889 |
ccaacaataaattgatttaaatggtaagagatt |
5632921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 82 - 124
Target Start/End: Original strand, 9798034 - 9798076
Alignment:
| Q |
82 |
aacaataaattgatttaaatggtaagagattagagctccttaa |
124 |
Q |
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| T |
9798034 |
aacaataaattaatttaagtggtaagagatttgagctccttaa |
9798076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 6743224 - 6743256
Alignment:
| Q |
80 |
ccaacaataaattgatttaaatggtaagagatt |
112 |
Q |
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| T |
6743224 |
ccaacaataaattgattcaaatggtaagagatt |
6743256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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