View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19800_low_7 (Length: 573)
Name: NF19800_low_7
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 13 - 559
Target Start/End: Complemental strand, 40395558 - 40395009
Alignment:
| Q |
13 |
aatatggtcacggtgtatacttttctccatggcatgccat-----ttataatacgtctttagtatttttcttgtaataatgttaggtagttataacttat |
107 |
Q |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395558 |
aatatggtcacggtgtatacttttctccatgacatgccatgccatttataatacgtctttagtatttttcttgtaataatgttaggtagttataacttat |
40395459 |
T |
|
| Q |
108 |
aatagtacgtttgaagaacaataaattttgggagagagagagttaagaagtagagtgataagagtggttttgagttcaattcttacctccggttaatacc |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395458 |
aatagtacgtttgaagaacaataaattttgggcgagagag--ttaagaagtagagtgataagagtggttttgagttcaattcttacctccggttaatacc |
40395361 |
T |
|
| Q |
208 |
atcatatatcttctttcattaatttattgctctagacaataatatgctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaa |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40395360 |
atcatatatcttctttcattaatttattgctctagacaataatatgctttgaatccatttcatttgaattgatattttctctatcattattattgtgaaa |
40395261 |
T |
|
| Q |
308 |
aaatgtttacaataattagtcttacacaatttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagt |
407 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40395260 |
aaatgtttacaataattagtcttacgcaatttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagt |
40395161 |
T |
|
| Q |
408 |
tataataattcaaatgaattctgtaataatgagatcaattaattgtatttgacgactccaactccaatagattaaacttggagcctgtaataattaggtt |
507 |
Q |
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| T |
40395160 |
tataataattcaaatgaattctgtaataataagatcaattaattgtatttgacgactccaactccaatagattaaacttggagcctgtaataattaggtc |
40395061 |
T |
|
| Q |
508 |
agccacctgatttcttgtagtagggattgactaatttaacaaggttgttact |
559 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
40395060 |
agccacctgatttcttgtagtagggattgactaatttaacaaagttcttact |
40395009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 12002659 - 12002583
Alignment:
| Q |
361 |
gctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataat |
437 |
Q |
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||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||| ||||||||||||| |
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| T |
12002659 |
gctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataaatgttcaaatggattctgtaataat |
12002583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 310
Target Start/End: Original strand, 51981796 - 51981864
Alignment:
| Q |
243 |
acaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaa |
310 |
Q |
| |
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|||||||||| | ||| |||||||| |||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
51981796 |
acaataatatcgttttaaatccattctatttgaattggtattttctccatcattattattgtgaaaaaa |
51981864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 18146545 - 18146339
Alignment:
| Q |
238 |
tctagacaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaa |
336 |
Q |
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|||||||| |||||| | |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
18146545 |
tctagacagtaatatcgttttgaatccattccatttgaattggtattttctccatcattattattgtgaaaaaacgtttacaataattagtcttggacaa |
18146446 |
T |
|
| Q |
337 |
tttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataa |
436 |
Q |
| |
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|||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||| || |||||||||| |||||||| |||||||||||| |
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| T |
18146445 |
tttatttgtgaaaatatatgtatagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataactgttcaaatggattctgtaataa |
18146346 |
T |
|
| Q |
437 |
tgagatc |
443 |
Q |
| |
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| ||||| |
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| T |
18146345 |
taagatc |
18146339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 238 - 443
Target Start/End: Complemental strand, 25631998 - 25631793
Alignment:
| Q |
238 |
tctagacaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaa |
336 |
Q |
| |
|
|||||||| |||||| | |||||||||||| |||||||| || ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
25631998 |
tctagacagtaatatcgttttgaatccattccatttgaaatggtattttctccatcattattattgtgaaaaaacgtttacaataattagtcttggacaa |
25631899 |
T |
|
| Q |
337 |
tttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataa |
436 |
Q |
| |
|
|||||||||||||||| | |||| |||||||| |||||||||| |||||||| |||||||| || ||||||||||| |||||||| |||||||||||| |
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| T |
25631898 |
tttatttgtgaaaatatatgtatagctaaaataaaaaatggaccacatctaaatctaaaatcgggtcaagttataat-gttcaaatggattctgtaataa |
25631800 |
T |
|
| Q |
437 |
tgagatc |
443 |
Q |
| |
|
| ||||| |
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| T |
25631799 |
taagatc |
25631793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 257 - 412
Target Start/End: Complemental strand, 48191737 - 48191582
Alignment:
| Q |
257 |
tgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaatttatttgtgaaaatacacg |
356 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
48191737 |
tgaatccattccatttgaattggtattttctccatcattattattgtgaaaaaacgtttacaataattagtcttggacaatttatttgtgaaaatatatg |
48191638 |
T |
|
| Q |
357 |
tattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataa |
412 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||| || |||||||||| |
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|
| T |
48191637 |
tatagctaaaatgaaaaatggaccacatctaaaactaaaatcgggtcaagttataa |
48191582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 255 - 443
Target Start/End: Original strand, 43173424 - 43173612
Alignment:
| Q |
255 |
tttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaatttatttgtgaaaataca |
354 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| || ||||||||||| |||||||| | |
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|
| T |
43173424 |
tttgaatccattccatttgaattggtattttcttcatcattattattgtgaaaaaacgtttacaataattagttttggacaatttatttatgaaaatata |
43173523 |
T |
|
| Q |
355 |
cgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgtaataatgagatc |
443 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| || || |||||||||| ||||||||| ||||||||||||| ||||| |
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|
| T |
43173524 |
tgtatagctaaaatgaaaaatggaccacatctaaaactaaagtcgggtcaagttataactattcaaatggattctgtaataataagatc |
43173612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 442
Target Start/End: Original strand, 37520394 - 37520503
Alignment:
| Q |
333 |
acaatttatttgtgaaaatacacgtattgctaaaatgaaaaatggacttcatctaaaactaaaatcaggccaagttataataattcaaatgaattctgta |
432 |
Q |
| |
|
|||||||||| |||||||| | ||| ||| ||||||||||||||| ||||||||||||||||| || |||||| ||| |||||||| |||||||| |
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| T |
37520394 |
acaatttattaatgaaaatatatttatagctcaaatgaaaaatggaccccatctaaaactaaaatcgggtcaagttctaactgttcaaatggattctgta |
37520493 |
T |
|
| Q |
433 |
ataatgagat |
442 |
Q |
| |
|
| ||| |||| |
|
|
| T |
37520494 |
acaataagat |
37520503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 238 - 352
Target Start/End: Original strand, 18412023 - 18412138
Alignment:
| Q |
238 |
tctagacaataatat-gctttgaatccatttcatttgaattgatattttctcaatcattattattgtgaaaaaatgtttacaataattagtcttacacaa |
336 |
Q |
| |
|
|||||||| |||||| | |||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
18412023 |
tctagacagtaatatcgttttgaatccattccatttgaattggtattttctccatcattattattgtgaaaaaacgtttacaataattagtctttgacaa |
18412122 |
T |
|
| Q |
337 |
tttatttgtgaaaata |
352 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
18412123 |
tttatttgtgaaaata |
18412138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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