View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19800_low_8 (Length: 522)
Name: NF19800_low_8
Description: NF19800
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19800_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Original strand, 490209 - 490554
Alignment:
| Q |
17 |
aataaagacaacaaaatttgcaatactgaagtataaagtggtctgtctacaaactagtttggattttggcacactgcactattttttatgatttggatta |
116 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490209 |
aataaagacaacaaaatttgtaatactgaagtataaagtggtctgtctacaaactagtttggattttggcacactgcactattttttatgatttggatta |
490308 |
T |
|
| Q |
117 |
actttgttgtgttatgtgcaacacttaatcagattatcagagcacagatgtttataactactgttgttatatgcatttagatttgatgcatgttcgtata |
216 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490309 |
acttttttgtgttatgtgcaacacttaatcagattatcagagcacagatgtttataactactgttgttatatgcatttagatttgatgcatgttcgtata |
490408 |
T |
|
| Q |
217 |
tattttttctcaggtcttatcaaaagaagacaccgagactcttaacttgtgcagaagtatgatggaaagaggagaatgtccgcccctcatggttgtttat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
490409 |
tattttttctcaggtcttatcaaaagaagacaccgagactcttaacttgtgcagaagtatgatggaaagaggagaatgtccgcccctcatggttgtttat |
490508 |
T |
|
| Q |
317 |
gatcctgtagaagggtaagtacttatgcaacacaaactgaaatcaa |
362 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
490509 |
gatcctgtagaagggtaagtacttatgcaacacaaactgaaatcaa |
490554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 28 - 355
Target Start/End: Original strand, 501902 - 502227
Alignment:
| Q |
28 |
caaaatttgcaatactgaagtataaagtggtctgtctacaaactagtttggattttggcacactgcactattttttatgatttggattaactttgttgtg |
127 |
Q |
| |
|
|||||||||||| | |||||||| || |||| |||||||||||||||||||||||| ||| |||||||||||| | ||||||| ||| ||||| ||||| |
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|
| T |
501902 |
caaaatttgcaacaatgaagtatcaaatggtttgtctacaaactagtttggatttttgca-actgcactatttgtcatgatttagatcaacttggttgtt |
502000 |
T |
|
| Q |
128 |
ttatgtgcaacacttaatcagattatcagagcacagatgtttataactactgttgttatatgcatttagatttgatgcatgttcgtatatattttttctc |
227 |
Q |
| |
|
||||| ||| ||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| |||| |||||| |||| |||| |
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|
| T |
502001 |
ttatgcacaatacttaatcagattatcagatcacagatgtttataaccattgttgttatatgcatttagatttgatgcctgtttgtatatctttt-tctc |
502099 |
T |
|
| Q |
228 |
aggtcttatcaaaagaagacaccgagactcttaacttgtgcagaagtatgatggaaagaggagaatgtccgcccctcatggttgtttatgatcctgtaga |
327 |
Q |
| |
|
|||| ||||||||||||| |||| || |||| |||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||| | || |
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|
| T |
502100 |
aggtattatcaaaagaaggcaccaaggctctaaacttgtgcacagatatgatggaaagaggagaatgtccacccctcatggttgtttatgatccgctgga |
502199 |
T |
|
| Q |
328 |
agggtaagtacttatgcaacacaaactg |
355 |
Q |
| |
|
||||||| | ||||||||||| |||||| |
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|
| T |
502200 |
agggtaactgcttatgcaacaaaaactg |
502227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 60 - 305
Target Start/End: Original strand, 494043 - 494289
Alignment:
| Q |
60 |
tgtctacaaactagtttggattttggcacactgcactattttttatgatttggattaactttgttgtgttatgtgcaacacttaatcagattatcagagc |
159 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||| | ||||||| ||| ||||| | ||||||||| |||||||||||||||||||||| | |
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|
| T |
494043 |
tgtctacaaactaatttggatttttgcacactgctctatttgtcatgatttcgatcaacttggctgtgttatgcacaacacttaatcagattatcaggtc |
494142 |
T |
|
| Q |
160 |
acagatgtttataactactgttgttatatgcatttagatttgatgcatgttcgtatatat-tttttctcaggtcttatcaaaagaagacaccgagactct |
258 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||| | ||||||| || | || ||||||||||||||| || |||| |
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|
| T |
494143 |
acagatgtttattactattgttgttatatgcttttagatttgatgcatgtttgtatatctctttttcttagatgttttcaaaagaagacaccaaggctct |
494242 |
T |
|
| Q |
259 |
taacttgtgcagaagtatgatggaaagaggagaatgtccgcccctca |
305 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| |
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|
| T |
494243 |
aaacttgtgcaggcgtatgatggaaagaggagaatgtccacccctca |
494289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 410 - 512
Target Start/End: Original strand, 490602 - 490704
Alignment:
| Q |
410 |
ggtaggttcactatagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
490602 |
ggtaggttcactatagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatg |
490701 |
T |
|
| Q |
510 |
atg |
512 |
Q |
| |
|
||| |
|
|
| T |
490702 |
atg |
490704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 167 - 347
Target Start/End: Original strand, 499006 - 499179
Alignment:
| Q |
167 |
tttataactactgttgttatatgcatttagatttgatgcatgttcgtatatattttttctcaggtcttatcaaaagaagacaccgagactcttaacttgt |
266 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| ||| |||||| |||| |||||||| ||||||||| |||||||| |||||| |
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|
| T |
499006 |
tttataacttttgttgttttatgcatttagatttgatgcaagtttgtatat-------ctcatgtcttatcgaaagaagactttgagactctaaacttga |
499098 |
T |
|
| Q |
267 |
gcagaagtatgatggaaagaggagaatgtccgcccctcatggttgtttatgatcctgtagaagggtaagtacttatgcaac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||| |
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| T |
499099 |
gcagaagtatgatggaaagaggagaatgtccgctcctcatggttgtttttgatcatgcagaagggtaagtacttatgcaac |
499179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 493065 - 493234
Alignment:
| Q |
30 |
aaatttgcaatactgaagtataaagtggtctgtctacaaactagtttggattttggcacactgcactattttttatgatttggattaactttgttgtgtt |
129 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||||| ||||||||||||| ||| ||| ||| ||||| | ||||||||||| |||||||||||||| |
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|
| T |
493065 |
aaatttgcaacactgaagtataa-gtggt-tgtctataaactagtttggaatttttaacaatgcgctattcgtcatgatttggatcaactttgttgtgtt |
493162 |
T |
|
| Q |
130 |
atgtgcaacacttaatcagattatcagagcacagatgtttataactactgttgttatatgcatttagatttg |
201 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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|
| T |
493163 |
acacgcttcacttaatcagattatcagagcacagatgtttataactcctgttgtttcatgcatttagatttg |
493234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 417 - 489
Target Start/End: Original strand, 494287 - 494359
Alignment:
| Q |
417 |
tcactatagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagacttttt |
489 |
Q |
| |
|
||||| ||||||| ||||| || || ||||| | ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
494287 |
tcactgtagaagctgataaatctataaaagaatcgacaataataacagaatatgttggagatgtagacttttt |
494359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 496
Target Start/End: Original strand, 499247 - 499320
Alignment:
| Q |
423 |
tagaagcagataagtccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaat |
496 |
Q |
| |
|
||||||| ||||| ||||| ||||| |||||| |||||| |||||||||||||||| |||||||||| |||||| |
|
|
| T |
499247 |
tagaagcggataaatccataaaagacttgacagtaataagagaatatgttggagatatagactttttaaagaat |
499320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 104 - 355
Target Start/End: Complemental strand, 19145627 - 19145377
Alignment:
| Q |
104 |
atgatttggattaactttgttgtgttatgtgcaacacttaatcagattatcagagcacagatgtttataactactgttgttatatgcatttagatttgat |
203 |
Q |
| |
|
||||||| ||| ||||| ||||| ||||| ||| |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
19145627 |
atgatttagatcaacttggttgttttatgcacaatacttaatcagattatcagagaacagatgtttataaccattgttgttatatgcatttagatttgat |
19145528 |
T |
|
| Q |
204 |
gcatgttcgtatatattttttctcaggtcttatcaaaagaagacaccgagactcttaacttgtgcagaagtatgatggaaagaggagaatgtccgcccct |
303 |
Q |
| |
|
| ||| ||||| |||||||||||| ||||||||||||| ||||||| ||| |||||||||| | ||||||||||||||||||||||||| ||||| |
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|
| T |
19145527 |
gtctgtctctatat-ctttttctcaggtattatcaaaagaaggcaccgagtctcaaaacttgtgcacacgtatgatggaaagaggagaatgtccacccct |
19145429 |
T |
|
| Q |
304 |
catggttgtttatgatcctgtagaagggtaagtacttatgcaacacaaactg |
355 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| |||||||||| |||||| |
|
|
| T |
19145428 |
catggttgtttatgatccgctggaagggtaagtgattatgcaacaaaaactg |
19145377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 104 - 355
Target Start/End: Complemental strand, 19124636 - 19124383
Alignment:
| Q |
104 |
atgatttggattaactttgttgtgttatgtgcaacacttaatcagattatcagagcacagatgtttataactactgttgttatatgcatttagatttgat |
203 |
Q |
| |
|
||||||| ||| ||||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
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|
| T |
19124636 |
atgatttagatcaacttggttgttttatgcacaatacttaatcagattatcagagcacagatgtttataaccattgttgttatatgcatttagatttaat |
19124537 |
T |
|
| Q |
204 |
gcatgttcgtatatattttttctcaggtcttatcaaaagaagacaccgagactcttaacttgtgcagaagtatgatggaaagaggag---aatgtccgcc |
300 |
Q |
| |
|
|| ||| |||||| |||||||||| | | ||||||||||| ||||||| ||| |||||||||| | ||||| |||||||||||| ||||||| || |
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|
| T |
19124536 |
gcctgtctgtatat-ctttttctcagatatcatcaaaagaaggcaccgagtctcaaaacttgtgcacacgtatggtggaaagaggagaataatgtccacc |
19124438 |
T |
|
| Q |
301 |
cctcatggttgtttatgatcctgtagaagggtaagtacttatgcaacacaaactg |
355 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| |||||||||| |||||| |
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|
| T |
19124437 |
cctcatggttgtttatgatccgctggaagggtaagtgattatgcaacaaaaactg |
19124383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 55 - 202
Target Start/End: Complemental strand, 19119015 - 19118868
Alignment:
| Q |
55 |
tggtctgtctacaaactagtttgga-ttttggcacactgcactattttttatgatttggattaactttgttgtgttatgtgcaacacttaatcagattat |
153 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||| |||||||||||| | ||||| | ||||||||| ||||| ||||| ||| ||||||||||||||| |
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|
| T |
19119015 |
tggtttgtctacaaactagtttggaatttttgca-actgcactatttgtcatgatctagattaacttggttgttttatgcacaatacttaatcagattat |
19118917 |
T |
|
| Q |
154 |
cagagcacagatgtttataactactgttgttatatgcatttagatttga |
202 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
19118916 |
cagagcacagatgtttataaccattgttgttatatacatttagatttga |
19118868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 510
Target Start/End: Complemental strand, 19124302 - 19124230
Alignment:
| Q |
438 |
ccatcaaagatttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatga |
510 |
Q |
| |
|
|||| |||| ||||||||||||| ||||||||||||||||||| |||| | |||||| ||||| ||||||| |
|
|
| T |
19124302 |
ccataaaagctttgacaataatagcagaatatgttggagatgtggactacgtaaagaatcgggaaaatgatga |
19124230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 448 - 510
Target Start/End: Complemental strand, 19145285 - 19145223
Alignment:
| Q |
448 |
tttgacaataataacagaatatgttggagatgtagactttttgaagaatagggaacatgatga |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||| | |||||| ||||| ||||||| |
|
|
| T |
19145285 |
tttgacaataatagcagaatatgttggagatgtggactacgtaaagaatcgggaaaatgatga |
19145223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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