View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19801_high_2 (Length: 531)
Name: NF19801_high_2
Description: NF19801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19801_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Original strand, 35291125 - 35291618
Alignment:
| Q |
17 |
aaaattgcaacatctccaagttcttctgatttcagaagttccacctttagaacttactctttttcattgcctgccacagacaaagaatatcattgtaaaa |
116 |
Q |
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| T |
35291125 |
aaaattgcaacatctccaagttcttctgatttcagaagttccacctttagaacttactctttttcattgcctgccacagacaaagaatatcattgtaaaa |
35291224 |
T |
|
| Q |
117 |
ccaacccttgcaatatcaatcattctcatgactttctttatctaaactccgagtatttcgatgatgatattaagatgtctggaagcaatattgatgagtt |
216 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
35291225 |
ccaacccttgcaatatcaatcattctcatgactttatttatctaaactccgagtatttcgatgaggatattaagatgtctggcagcaatattgatgagtt |
35291324 |
T |
|
| Q |
217 |
gaatcgcaaatcagtcatcagccttcctcagggagaagcagaaattgttcagtggatcatatgaaacttagtcaagatagtaacaatatgcataaggttt |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35291325 |
gaatcgcaaatcagtcatcagccttccccagggagaagcagaaattgttcagtggatcatatgaaacttagtcaagatagtaacaatatgcataaggttt |
35291424 |
T |
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| Q |
317 |
taagtagaaagctttttgtaagggaaaagagaaaatttgatacaattccatgcaatatacacaatatgtaaggtttctgtattttgttttggatacaaac |
416 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35291425 |
taagtagaaagctttttgtaaaggaaaagagaaaatttgatacaattccatgcaatatacacaatatgtaaggtttctgtattttgttttggatacaaac |
35291524 |
T |
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| Q |
417 |
tacagaacacaagaaattcatttacaaagaggcgatt---attttctagtcttaatttcataatgaatcagtttggtatttaccctaaattggt |
507 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35291525 |
tacagaacacaagaaattcatttacaaagaggcgattataattttctagtcttaatttcataatgaatcagtttggtatttacccttaattggt |
35291618 |
T |
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