View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19801_low_1 (Length: 539)
Name: NF19801_low_1
Description: NF19801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19801_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 244 - 526
Target Start/End: Original strand, 40191570 - 40191853
Alignment:
| Q |
244 |
cacctgcaacatcccatatacaaaatgaaatacgagctccttgaacatacaaagttttgtccattaaattcaatccttccatttgcaaactcctcttctc |
343 |
Q |
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| T |
40191570 |
cacctgcaacatcccatatacaaaatgaaatacgagctccttgaacatacaaagttttgtccattaaattcaatccttccatttgcaaactcctcttctc |
40191669 |
T |
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| Q |
344 |
tacctcatttcctacatacttgatctgnnnnnnnnnnnnnt-cattcacataaaaacctatgaaacacatacacctgacacaaacaccgagacatcaaca |
442 |
Q |
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| T |
40191670 |
tacctcatttcctacatacttgatctgaaaaagaaaaaaattcattcacataaaaacctatgaaacacatacacctgacacaaacaccgagccatcaaca |
40191769 |
T |
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| Q |
443 |
tcgatcataatttgagaaaatcgcatatttcaatctaaagtaatcacatgtctcagtgccaaacactaacacatgtcagaagtg |
526 |
Q |
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| T |
40191770 |
tcgatcataatttgagaaaatcgcatatttcaatccaaagtaatcacatgtctcagtaccaaacactaacacatgtcagaagtg |
40191853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 40191337 - 40191445
Alignment:
| Q |
11 |
acatcatcagtagagcaactgcatctttacaagccatgggaatttgatccaaggactttttgtcacctactcaaaccccgcataataatttttcatcaat |
110 |
Q |
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| T |
40191337 |
acataatcagtagagcaactgcatctttacaagccatgggaatttgatccaaggactttttgtcacctactcaaaccccgcataataatttttcatcaat |
40191436 |
T |
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| Q |
111 |
aactaactc |
119 |
Q |
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| T |
40191437 |
aactaactc |
40191445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 8820389 - 8820445
Alignment:
| Q |
420 |
acacaaacaccgagacatcaacatcgatcataatttgagaaaatcgcatatttcaat |
476 |
Q |
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|||||||||| || || ||||||||||| ||||||||| |||||| |||| |||||| |
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| T |
8820389 |
acacaaacactgacacgtcaacatcgataataatttgataaaatcacataattcaat |
8820445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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