View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19801_low_3 (Length: 290)

Name: NF19801_low_3
Description: NF19801
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19801_low_3
NF19801_low_3
[»] chr4 (2 HSPs)
chr4 (85-272)||(55907344-55907531)
chr4 (1-60)||(55907251-55907310)
[»] chr2 (4 HSPs)
chr2 (85-272)||(1036086-1036273)
chr2 (1-60)||(1035993-1036052)
chr2 (227-272)||(1036422-1036467)
chr2 (171-222)||(44575173-44575224)
[»] chr5 (1 HSPs)
chr5 (172-240)||(41900247-41900315)
[»] chr6 (1 HSPs)
chr6 (170-223)||(6403848-6403901)
[»] chr3 (1 HSPs)
chr3 (175-240)||(513428-513493)
[»] chr7 (2 HSPs)
chr7 (194-234)||(10168825-10168865)
chr7 (194-234)||(10176350-10176390)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 55907344 - 55907531
Alignment:
Q  85 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907344 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 55907443  T
Q  185 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctcc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55907444 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctcc 55907531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 55907251 - 55907310
Alignment:
Q  1 aagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 60  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55907251 aagtaaaagaagaagaacaacaacaatgaggttgagtaaactggttgctttcagaaacac 55907310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 85 - 272
Target Start/End: Original strand, 1036086 - 1036273
Alignment:
Q  85 cacaactgtgacagctgtaaataattgttatttatctgataattgttgggaatatgtcttcacatttctgatcaacgacaatcctcgctacttgaaatct 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1036086 cacaactgtgacagctgtaaataattgttatttatctgataattgttcggaatatgtcttcacatttctgatcaatgacaatcctcgctacttgaaatct 1036185  T
Q  185 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaattatcctctatcaaacttgcactttcctcc 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  1036186 ctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctctaactatcctctatcaaacttgcactttcctcc 1036273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 1035993 - 1036052
Alignment:
Q  1 aagtaaaagaagaagaagaacaacaatgaggttgagtaaactggttgctttcagaaacac 60  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1035993 aagtaaaagaagaagaagaacaacaatgaggttgaataaactggttgctttcagaaacac 1036052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 1036422 - 1036467
Alignment:
Q  227 cttcgattctctctaattatcctctatcaaacttgcactttcctcc 272  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  1036422 cttcgattctctctaactatcctctatcaaacttgcactttcctcc 1036467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 44575173 - 44575224
Alignment:
Q  171 gctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaa 222  Q
    |||||||||| |||||||| | |||||| ||||||||||||||| |||||||    
T  44575173 gctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaa 44575224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 240
Target Start/End: Original strand, 41900247 - 41900315
Alignment:
Q  172 ctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 240  Q
    |||||||||||||||||||  |||||||||||||||||||||  |||||||||||||||||||||||||    
T  41900247 ctacttgaaatctctctcactcgtctccaaacagtttctctccatcaccaacactcttcgattctctct 41900315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 223
Target Start/End: Complemental strand, 6403901 - 6403848
Alignment:
Q  170 cgctacttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaac 223  Q
    ||||||||||||||||||||| |||| ||||||||||| |||||  ||||||||    
T  6403901 cgctacttgaaatctctctcagccgtatccaaacagttcctctctatcaccaac 6403848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 513428 - 513493
Alignment:
Q  175 cttgaaatctctctcaaccgtctccaaacagtttctctcagtcaccaacactcttcgattctctct 240  Q
    |||||||||||||||  ||||||| |||||||| |||||  ||||||||| ||| |||||||||||    
T  513428 cttgaaatctctctccgccgtctcaaaacagttactctccatcaccaacaatctccgattctctct 513493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 10168825 - 10168865
Alignment:
Q  194 gtctccaaacagtttctctcagtcaccaacactcttcgatt 234  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10168825 gtctccaaacagttcctctccatcaccaacactcttcgatt 10168865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 234
Target Start/End: Original strand, 10176350 - 10176390
Alignment:
Q  194 gtctccaaacagtttctctcagtcaccaacactcttcgatt 234  Q
    |||||||||||||| |||||  |||||||||||||||||||    
T  10176350 gtctccaaacagttcctctccatcaccaacactcttcgatt 10176390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University