View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19802_high_1 (Length: 527)

Name: NF19802_high_1
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19802_high_1
NF19802_high_1
[»] chr5 (31 HSPs)
chr5 (1-513)||(30072295-30072810)
chr5 (214-342)||(18452417-18452545)
chr5 (1-99)||(16622514-16622611)
chr5 (1-99)||(26329907-26330004)
chr5 (1-72)||(19763750-19763821)
chr5 (1-99)||(11274167-11274265)
chr5 (4-71)||(18452677-18452744)
chr5 (259-445)||(12265092-12265280)
chr5 (1-71)||(7742735-7742805)
chr5 (1-99)||(17027707-17027804)
chr5 (220-358)||(25594233-25594371)
chr5 (3-99)||(24841935-24842030)
chr5 (4-99)||(22229986-22230081)
chr5 (1-96)||(25594533-25594627)
chr5 (211-320)||(17028654-17028763)
chr5 (1-68)||(22643773-22643840)
chr5 (1-72)||(23157668-23157739)
chr5 (5-71)||(16634230-16634296)
chr5 (1-85)||(24517525-24517609)
chr5 (13-92)||(25680778-25680857)
chr5 (226-450)||(26329538-26329764)
chr5 (259-344)||(17381598-17381683)
chr5 (6-47)||(17695352-17695393)
chr5 (1-45)||(20694819-20694863)
chr5 (274-358)||(25681048-25681132)
chr5 (259-358)||(16622218-16622317)
chr5 (1-72)||(18178281-18178352)
chr5 (275-358)||(18281792-18281875)
chr5 (1-72)||(26070653-26070724)
chr5 (269-347)||(18178585-18178663)
chr5 (4-52)||(12339899-12339947)
[»] chr1 (39 HSPs)
chr1 (1-99)||(11769831-11769929)
chr1 (4-99)||(12423752-12423847)
chr1 (4-99)||(23519606-23519701)
chr1 (1-68)||(25494357-25494424)
chr1 (4-99)||(50047357-50047452)
chr1 (1-82)||(30675664-30675744)
chr1 (266-450)||(30675871-30676058)
chr1 (4-72)||(30781942-30782010)
chr1 (253-383)||(25726214-25726348)
chr1 (253-383)||(25734622-25734756)
chr1 (12-99)||(9328357-9328444)
chr1 (1-60)||(25727785-25727844)
chr1 (1-60)||(25736193-25736252)
chr1 (12-95)||(26657666-26657749)
chr1 (1-72)||(26854184-26854255)
chr1 (1-68)||(52271113-52271180)
chr1 (19-99)||(9353209-9353289)
chr1 (14-99)||(9252447-9252532)
chr1 (6-47)||(27461070-27461111)
chr1 (270-387)||(18300587-18300708)
chr1 (1-72)||(15298735-15298805)
chr1 (1-72)||(25373925-25373996)
chr1 (13-82)||(18300857-18300926)
chr1 (30-83)||(23223622-23223675)
chr1 (3-72)||(23505938-23506006)
chr1 (267-356)||(34533074-34533163)
chr1 (1-68)||(19257674-19257739)
chr1 (302-447)||(50047566-50047716)
chr1 (269-344)||(9353409-9353484)
chr1 (1-71)||(26102236-26102306)
chr1 (1-47)||(31313731-31313777)
chr1 (253-318)||(27460497-27460562)
chr1 (1-57)||(25730450-25730506)
chr1 (7-53)||(18391267-18391314)
chr1 (9-72)||(25126667-25126730)
chr1 (5-72)||(25665634-25665701)
chr1 (1-43)||(15416866-15416908)
chr1 (6-43)||(31319504-31319541)
chr1 (269-329)||(23519340-23519400)
[»] chr7 (40 HSPs)
chr7 (1-99)||(29544699-29544797)
chr7 (4-99)||(20470647-20470742)
chr7 (12-96)||(20017143-20017227)
chr7 (1-99)||(9801712-9801809)
chr7 (1-95)||(21545668-21545762)
chr7 (221-349)||(21545441-21545568)
chr7 (26-99)||(7815527-7815600)
chr7 (4-99)||(21471978-21472072)
chr7 (5-99)||(315356-315450)
chr7 (12-94)||(10670417-10670499)
chr7 (236-447)||(23126536-23126751)
chr7 (259-384)||(4092036-4092166)
chr7 (267-443)||(20470266-20470442)
chr7 (234-450)||(5636616-5636838)
chr7 (4-99)||(7493495-7493590)
chr7 (4-95)||(20446384-20446475)
chr7 (1-68)||(23125080-23125147)
chr7 (1-99)||(7494876-7494973)
chr7 (4-82)||(22067657-22067735)
chr7 (4-72)||(1074635-1074703)
chr7 (1-44)||(12358655-12358698)
chr7 (259-314)||(26839793-26839848)
chr7 (269-387)||(20017429-20017551)
chr7 (259-343)||(7777683-7777767)
chr7 (1-72)||(18496744-18496815)
chr7 (1-72)||(24596868-24596939)
chr7 (18-80)||(9070584-9070646)
chr7 (11-72)||(8308900-8308961)
chr7 (6-47)||(14649680-14649721)
chr7 (32-72)||(4828998-4829038)
chr7 (211-339)||(9070814-9070942)
chr7 (1-53)||(30405773-30405825)
chr7 (4-82)||(2630331-2630409)
chr7 (3-57)||(5312665-5312719)
chr7 (1-47)||(10253629-10253675)
chr7 (405-450)||(7777575-7777619)
chr7 (266-339)||(10670133-10670206)
chr7 (266-314)||(3400267-3400315)
chr7 (18-82)||(7777895-7777959)
chr7 (15-47)||(28951863-28951895)
[»] chr2 (27 HSPs)
chr2 (4-99)||(30998953-30999048)
chr2 (5-99)||(27417100-27417194)
chr2 (6-83)||(16593604-16593681)
chr2 (6-72)||(18818886-18818952)
chr2 (233-384)||(21844372-21844527)
chr2 (1-72)||(18236167-18236238)
chr2 (4-99)||(25474219-25474314)
chr2 (233-318)||(21842815-21842900)
chr2 (5-68)||(21505007-21505070)
chr2 (12-71)||(22525685-22525744)
chr2 (1-57)||(14921918-14921974)
chr2 (1-72)||(17415028-17415098)
chr2 (1-72)||(19541216-19541286)
chr2 (4-71)||(31274138-31274205)
chr2 (4-99)||(35707985-35708080)
chr2 (405-450)||(9504501-9504546)
chr2 (405-450)||(9515867-9515912)
chr2 (1-70)||(24188149-24188217)
chr2 (1-66)||(31262176-31262241)
chr2 (252-381)||(21504131-21504264)
chr2 (32-72)||(34063705-34063745)
chr2 (1-72)||(1732730-1732801)
chr2 (6-96)||(1733275-1733365)
chr2 (259-333)||(15829536-15829610)
chr2 (24-57)||(19949436-19949469)
chr2 (6-47)||(21848963-21849004)
chr2 (405-450)||(30999357-30999401)
[»] chr3 (27 HSPs)
chr3 (259-442)||(19218684-19218872)
chr3 (233-450)||(10342165-10342388)
chr3 (1-99)||(10341966-10342064)
chr3 (4-96)||(25883285-25883377)
chr3 (1-68)||(19219079-19219146)
chr3 (7-99)||(11521350-11521442)
chr3 (1-72)||(18474349-18474420)
chr3 (1-72)||(19542988-19543059)
chr3 (5-99)||(1475117-1475211)
chr3 (8-97)||(18065982-18066072)
chr3 (1-71)||(19263769-19263842)
chr3 (220-446)||(2729078-2729302)
chr3 (4-72)||(12573472-12573540)
chr3 (4-72)||(13549936-13550004)
chr3 (1-72)||(5632407-5632477)
chr3 (259-318)||(16970882-16970941)
chr3 (4-99)||(21018059-21018154)
chr3 (4-75)||(2729484-2729557)
chr3 (1-72)||(8402415-8402487)
chr3 (1-97)||(23908110-23908206)
chr3 (31-99)||(33914405-33914473)
chr3 (267-358)||(11475300-11475391)
chr3 (266-357)||(19263467-19263558)
chr3 (4-99)||(27415350-27415444)
chr3 (3-53)||(11475028-11475078)
chr3 (1-47)||(25188937-25188983)
chr3 (5-57)||(16970645-16970697)
[»] chr6 (15 HSPs)
chr6 (1-96)||(30355496-30355591)
chr6 (1-71)||(26499712-26499782)
chr6 (4-99)||(17860286-17860381)
chr6 (209-347)||(19670204-19670342)
chr6 (4-72)||(15575106-15575174)
chr6 (1-53)||(33638265-33638317)
chr6 (1-53)||(33638388-33638440)
chr6 (286-435)||(30235866-30236017)
chr6 (1-72)||(24507307-24507377)
chr6 (20-81)||(15998708-15998769)
chr6 (411-450)||(13723349-13723387)
chr6 (259-313)||(13723840-13723894)
chr6 (233-318)||(12971971-12972056)
chr6 (6-47)||(26512668-26512709)
chr6 (6-47)||(26517784-26517825)
[»] chr8 (34 HSPs)
chr8 (259-452)||(15213239-15213431)
chr8 (4-99)||(16054476-16054571)
chr8 (12-96)||(28901190-28901274)
chr8 (4-83)||(13081788-13081867)
chr8 (1-96)||(16052117-16052212)
chr8 (214-314)||(23893494-23893595)
chr8 (12-99)||(11310094-11310180)
chr8 (8-99)||(28902275-28902366)
chr8 (1-65)||(14424684-14424748)
chr8 (233-450)||(16051781-16052004)
chr8 (1-72)||(28291965-28292036)
chr8 (1-71)||(32239467-32239537)
chr8 (1-70)||(6888059-6888128)
chr8 (4-68)||(29291952-29292016)
chr8 (1-72)||(30543940-30544012)
chr8 (265-450)||(32239708-32239895)
chr8 (8-95)||(5569981-5570068)
chr8 (1-56)||(28859119-28859174)
chr8 (1-72)||(30850964-30851035)
chr8 (13-99)||(24120415-24120501)
chr8 (12-72)||(22894396-22894456)
chr8 (1-72)||(5153937-5154008)
chr8 (267-318)||(5569790-5569841)
chr8 (3-53)||(13583403-13583453)
chr8 (1-72)||(31436652-31436719)
chr8 (4-72)||(11437602-11437670)
chr8 (1-72)||(12956660-12956732)
chr8 (274-318)||(24927475-24927519)
chr8 (1-71)||(24696761-24696832)
chr8 (233-315)||(24120669-24120751)
chr8 (18-72)||(27097666-27097720)
chr8 (27-96)||(14976952-14977021)
chr8 (10-99)||(29047178-29047267)
chr8 (405-445)||(13304987-13305026)
[»] chr4 (38 HSPs)
chr4 (14-96)||(17026537-17026619)
chr4 (4-72)||(31859765-31859833)
chr4 (4-99)||(15192385-15192480)
chr4 (4-99)||(51884784-51884879)
chr4 (2-99)||(18898163-18898259)
chr4 (19-99)||(1695684-1695764)
chr4 (12-95)||(12111169-12111252)
chr4 (8-99)||(25315069-25315160)
chr4 (4-99)||(27302959-27303054)
chr4 (1-99)||(5906600-5906698)
chr4 (234-344)||(12110919-12111029)
chr4 (1-99)||(47024603-47024700)
chr4 (3-72)||(19601980-19602048)
chr4 (259-339)||(15192667-15192747)
chr4 (1-71)||(17187352-17187422)
chr4 (2-72)||(34864160-34864229)
chr4 (3-72)||(13064607-13064676)
chr4 (3-68)||(33519211-33519276)
chr4 (14-96)||(5676392-5676474)
chr4 (14-99)||(10320058-10320143)
chr4 (3-72)||(21077414-21077483)
chr4 (220-312)||(34863884-34863976)
chr4 (234-297)||(5676646-5676709)
chr4 (26-72)||(23353822-23353868)
chr4 (6-47)||(46647379-46647420)
chr4 (405-450)||(47024234-47024278)
chr4 (4-72)||(9782849-9782916)
chr4 (269-349)||(21077716-21077796)
chr4 (4-72)||(22119803-22119870)
chr4 (1-72)||(7024083-7024154)
chr4 (275-358)||(19602227-19602310)
chr4 (1-72)||(26159935-26160005)
chr4 (405-447)||(12806443-12806484)
chr4 (269-339)||(17024523-17024593)
chr4 (6-47)||(13275631-13275672)
chr4 (35-72)||(29437674-29437711)
chr4 (265-293)||(25314884-25314912)
chr4 (214-318)||(47024368-47024472)
[»] scaffold0171 (2 HSPs)
scaffold0171 (1-71)||(21577-21647)
scaffold0171 (4-83)||(6377-6456)
[»] scaffold0362 (1 HSPs)
scaffold0362 (2-95)||(7799-7892)
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-70)||(11564-11633)
[»] scaffold0011 (1 HSPs)
scaffold0011 (4-72)||(228051-228118)
[»] scaffold0650 (1 HSPs)
scaffold0650 (12-99)||(5607-5694)
[»] scaffold0282 (1 HSPs)
scaffold0282 (12-99)||(22451-22538)
[»] scaffold0188 (1 HSPs)
scaffold0188 (4-82)||(26809-26887)
[»] scaffold1149 (1 HSPs)
scaffold1149 (13-72)||(1978-2037)
[»] scaffold0386 (4 HSPs)
scaffold0386 (21-99)||(8546-8624)
scaffold0386 (1-99)||(11636-11734)
scaffold0386 (269-347)||(8321-8399)
scaffold0386 (253-347)||(11351-11445)
[»] scaffold0337 (1 HSPs)
scaffold0337 (1-72)||(1988-2058)
[»] scaffold0185 (1 HSPs)
scaffold0185 (6-72)||(2684-2750)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-57)||(447158-447211)
[»] scaffold0065 (1 HSPs)
scaffold0065 (13-72)||(12435-12494)


Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 30072295 - 30072810
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgatn 100  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     
T  30072295 aagattgaagattaatggttcttaaaaggtttttaaagacaatacaaagtgaagaaatttcatttcaagttcgtatgcgtttccaaacggaagaacgata 30072394  T
Q  101 nnnnnnnnnnnn----gggatgaaaacgcaagatttcacacacagggactgtctcatgtgccactatcgcatgaggcagtgttaccactgccccaggcgt 196  Q
                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30072395 aaaaaaaaaaaaaaaagggatgaaaacgcaagatttcacacacagggactgtctcatgtgccactatcgcatgaggcagtgttaccactgccccaggcgc 30072494  T
Q  197 ctcctgcacacgactgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatca 296  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072495 ctcatgcacacgactgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatca 30072594  T
Q  297 tttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaaggggtaaagcatcagagttccaaggcaggattccaacctc 396  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30072595 tttaatataaatagagacccttgtacacattatttttcattcataaagctagcagttcaaggggtaaagcatcagagtttcaaggcaggattccaacctc 30072694  T
Q  397 atcttgactctctctagggtatatttttcctattgttttgttatgatgtttgtttctattatttttcattcatagtcactttctactgagatcaatttaa 496  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30072695 atcttgactctctctagggtatattttt-ctattgttttgttatgatgtttgtttctattatttttcattcatagtcactttctactgagatcaatttaa 30072793  T
Q  497 tcattgagattaaaagt 513  Q
    |||||||||||||||||    
T  30072794 tcattgagattaaaagt 30072810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 214 - 342
Target Start/End: Complemental strand, 18452545 - 18452417
Alignment:
Q  214 gggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagaga 313  Q
    |||||||||||| ||||| ||||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||| |||||||  | ||||||||||    
T  18452545 gggcataaattgtctgcagcttgtttttcaagctaaaacggtggaaaaagccaaattttcttctcttaaaccttaagtgatcatttgttgtaaatagaga 18452446  T
Q  314 cccttttacacattatttttcattcataa 342  Q
    | |||  |||||||||| |||||||||||    
T  18452445 ctcttgcacacattattattcattcataa 18452417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 16622611 - 16622514
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||||| || ||||||||| |||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||| | |||||||||||    
T  16622611 aagattgaagaccagtggttcttagaaggtttt-gaagacaatacaaattgaagaaaattcatttcaagttcgtaggagtttccagatggaagaacgat 16622514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 26330004 - 26329907
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||| |||||||| |||| ||||||||| |||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||||||    
T  26330004 aagattgaag-tcaatggtccttagaaggttttttaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacggaagaacgat 26329907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19763821 - 19763750
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||    
T  19763821 aagattgaagatcaagggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttc 19763750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11274265 - 11274167
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||||||  ||| ||||||||||||||||||| || |||||| ||  ||||||||||||    
T  11274265 aagattgaagaccaatggttcttagaaggtctttgaagacaatacaagatgatgaaatttcatttcaagttcctaggagttttcatgcggaagaacgat 11274167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 71
Target Start/End: Complemental strand, 18452744 - 18452677
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||||| |||||||||||||    
T  18452744 attgaagatcaatggttcttataaggttttttaaaacaatacaaagtgaagaaaattcatttcaagtt 18452677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 259 - 445
Target Start/End: Complemental strand, 12265280 - 12265092
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg 358  Q
    |||| |||||||||||||| |||||||||||||||| ||||  |||||  ||||| ||||  ||||| |||| |||||| | ||||| ||| ||||||||    
T  12265280 aaaatctcagttttcttcttttaaaccttaagtaattatttgctataataagagatccttgcacacaatattattcatttagaaagccagcggttcaagg 12265181  T
Q  359 ----ggtaaagcatcagagttccaaggcaggattccaacctcatcttgactctctctagggtatatttttcctattgttttgttatgatgt 445  Q
        ||| ||||||||||||| ||||| |||||| |  |||  |||||  ||||||||| |||||||||| |||||||||||| |||||||    
T  12265180 taatggtcaagcatcagagtttcaaggtaggatttcttccttctcttg-ttctctctagtgtatattttt-ctattgttttgtaatgatgt 12265092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 7742805 - 7742735
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||  || |||||||||    
T  7742805 aagactgaagatcaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaaatcgtttcaagtt 7742735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 17027707 - 17027804
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||| | |||| |||||| |||||| ||||||||||||||||||||||||| || ||||||| ||| || ||||||||| ||| |||||||||    
T  17027707 aagattgaagtt-aatgcttcttagaaggttcttgaagacaatacaaagtgaagaaaattaatttcaatttcctaggagtttccatacgaaagaacgat 17027804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 220 - 358
Target Start/End: Complemental strand, 25594371 - 25594233
Alignment:
Q  220 aaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttt 319  Q
    |||||||| | | ||||||||||||| | ||||||||| ||| || || ||||||||||||||||| ||||||| ||| |  ||| |||||| ||||||     
T  25594371 aaattgcccgtagcttgtttttcaagatgaaacggtggaaaaggcccacttttcttctcttaaaccctaagtaagcatatgctatcaatagacacccttg 25594272  T
Q  320 tacacattatttttcattcataaagctagcagttcaagg 358  Q
     ||| |||||| |||||| ||||||||||  ||||||||    
T  25594271 aacatattattattcatttataaagctagtggttcaagg 25594233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 24841935 - 24842030
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||| ||||||||||||| |||| |||||||||||| ||||| |||||||| ||||||||| |||| || ||||||||| |||  ||||||||    
T  24841935 gattgaag-tcaatggttcttagaaggattttgaagacaacacaaaatgaagaaaattcatttcatgttcctaggagtttccagacgacagaacgat 24842030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 22229986 - 22230081
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||| |||||||| |||||| ||||||| ||||| |||||||||||   ||| |||||||| || |||||| || |||||||||||||    
T  22229986 attgaagatcaagggttcttagaaggttgttgaagataataccaagtgaagaaaacacatctcaagttcctaggagttttcagacggaagaacgat 22230081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 25594627 - 25594533
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    ||||||||| |||||||| | ||| |||||||||| ||| ||| ||||||||||||| |||| ||||||||| || ||||||||| ||||||||||    
T  25594627 aagattgaatatcaatggatattagaaggtttttgtagataatgcaaagtgaagaaaattca-ttcaagttcctaggagtttccagacggaagaac 25594533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 320
Target Start/End: Original strand, 17028654 - 17028763
Alignment:
Q  211 tgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 310  Q
    |||||||| ||||||||||||  ||  ||||||||  ||||  |||| |||| |  ||||||||||||||||||| |||||||||||||  |||||||||    
T  17028654 tgtgggcagaaattgcctgcagtttagttttcaagtcaaaattgtggaaaaaacctagttttcttctcttaaaccctaagtaatcattttctataaatag 17028753  T
Q  311 agaccctttt 320  Q
    | ||||||||    
T  17028754 ataccctttt 17028763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 22643840 - 22643773
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    |||||| || |||| ||||||||||||||| |||||| |||||||||| |||||||| ||||||||||    
T  22643840 aagattaaatatcagtggttcttaaaaggtatttgaatacaatacaaactgaagaaaattcatttcaa 22643773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23157739 - 23157668
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||| ||||||||||||| ||||| ||| ||||||| | |||||||||||| ||||||| ||||||    
T  23157739 aagattgaagttcaatggttcttataaggtatttaaagacaacagaaagtgaagaaagttcatttaaagttc 23157668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 16634230 - 16634296
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    ||||||| |||||||||||| |||||||||||||| |||||||  |||| ||| |||||||||||||    
T  16634230 ttgaagaccaatggttcttagaaggtttttgaagaaaatacaagatgaaaaaaattcatttcaagtt 16634296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 24517525 - 24517609
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttcca 85  Q
    ||||||| ||| |||||||| | | ||||||||| |||| |||| |||| ||||||| |||||||||||||| || |||||||||    
T  24517525 aagattgcagaccaatggttatcataaggttttttaagataatagaaagcgaagaaaattcatttcaagttcctaggagtttcca 24517609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 25680778 - 25680857
Alignment:
Q  13 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaa 92  Q
    |||| ||||||| |||||||| ||| |||||||||||| |||||| ||||||||| |||  || ||||||||| ||||||    
T  25680778 caatagttcttagaaggttttagaaaacaatacaaagtaaagaaaattcatttcaggtttctaggagtttccagacggaa 25680857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 450
Target Start/End: Complemental strand, 26329764 - 26329538
Alignment:
Q  226 cctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacaca 325  Q
    ||||||||||||||| ||||||  | |||||  |||||||||||||||||||| |||||| ||   |||| |||  ||||||||||  |||||  || ||    
T  26329764 cctgcaacttgttttccaagctggatcggtgcaaaaagctcagttttcttctcctaaaccctacccaatcgtttgctataaatagatgcccttgcactca 26329665  T
Q  326 ttatttttcattcataaagctagcagttcaagg----ggtaaagcatcagagttccaaggcaggattccaacctcatcttgactctctctagggtatatt 421  Q
    ||||||| |||  | ||  |||   ||||||||    ||| |||||| |||| | |||||||||||| |  |||  ||||  | ||||||||||||| ||    
T  26329664 ttattttccatatagaacactaatggttcaaggcaagggtcaagcattagagcttcaaggcaggatttcttccttctcttatc-ctctctagggtatgtt 26329566  T
Q  422 tttcctattgttttgttatgatgtttgtt 450  Q
    |||| ||||||||||||||||||||||||    
T  26329565 tttc-tattgttttgttatgatgtttgtt 26329538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 259 - 344
Target Start/End: Complemental strand, 17381683 - 17381598
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaag 344  Q
    |||| |||||||||||||||||||||  || ||||||||  | |||||||||||||||||  ||||||| || || ||||| ||||    
T  17381683 aaaaactcagttttcttctcttaaacactatgtaatcatacattataaatagagacccttacacacatttttatttattcaaaaag 17381598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 17695393 - 17695352
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  17695393 tgaagatcaatggttattagaaggtttttgaagacaatacaa 17695352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20694819 - 20694863
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatac 45  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  20694819 aagattgaagataaatggttcttagaaggtatttgaagacaatac 20694863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 25681048 - 25681132
Alignment:
Q  274 ttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg 358  Q
    |||||||||||| |||| ||||||||  ||||||||||||| |||  ||||||||||  | ||||| ||||||||  ||||||||    
T  25681048 ttctcttaaaccctaagaaatcatttgctataaatagagacacttgcacacattattaattattcagaaagctagtggttcaagg 25681132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 358
Target Start/End: Complemental strand, 16622317 - 16622218
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg 358  Q
    ||||||||| |||||| |||||||||  |||||||||||  | ||||||||||||| |||  ||| | | || || ||||||||||||||  ||||||||    
T  16622317 aaaagctcacttttctcctcttaaactctaagtaatcatacattataaatagagactcttgcacatacttttatttattcataaagctagtggttcaagg 16622218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18178281 - 18178352
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| |||| ||||||  ||||| |||||||| |||||||| |||| ||| ||||| ||||||||    
T  18178281 aagattgaagaccaattgttcttggaaggtctttgaagataatacaaattgaataaaattcatctcaagttc 18178352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 358
Target Start/End: Complemental strand, 18281875 - 18281792
Alignment:
Q  275 tctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg 358  Q
    |||||||| || |||||||||||  ||||||||||| |||||||  ||||  | || |||||||| |||||||||||| |||||    
T  18281875 tctcttaacccctaagtaatcatgcaatataaatagtgacccttgcacactcttttcttcattcagaaagctagcagtgcaagg 18281792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26070653 - 26070724
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||| ||||||| || |||||||||||||||||| |||  |  ||||| |||| |||||||||    
T  26070653 aagattgaagatctatggttcgtataaggtttttgaagacaatgcaagttagagaaaattcagttcaagttc 26070724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 347
Target Start/End: Original strand, 18178585 - 18178663
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagcta 347  Q
    |||||||||||||| || |||||||| ||  ||||| |||||||||||||  |||| || || |||||||| |||||||    
T  18178585 ttttcttctcttaacccctaagtaatgatgcaatatcaatagagacccttgcacacttttttattcattcaaaaagcta 18178663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 12339947 - 12339899
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtga 52  Q
    |||||| ||||| |||||||| |||||  ||||||||||||||||||||    
T  12339947 attgaaaatcaagggttcttagaaggtcgttgaagacaatacaaagtga 12339899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 1e-36; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11769929 - 11769831
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||||    
T  11769929 aagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctatgagtttccagacggaagaacgat 11769831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 12423847 - 12423752
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||| |||||||| |||||| |||||||||||||||||||||| || |||||||||||||| || |||||| |||||| |||||||||    
T  12423847 attgaagatcaaaggttcttagaaggttgttgaagacaatacaaagtgaaggaaattcatttcaagttcctaggagttttcaaacgaaagaacgat 12423752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 23519701 - 23519606
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||| |||||||||||| |||||| |||||||||||| |||||||||||| || ||||||||||| || |||||| || |||||||||||||    
T  23519701 attgaagaccaatggttcttagaaggttgttgaagacaatagaaagtgaagaaaatttatttcaagttcctaggagttttcagacggaagaacgat 23519606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 25494424 - 25494357
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  25494424 aagattgaagaccaatggttcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaa 25494357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 50047357 - 50047452
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||||||| ||||||||||| |||||||||||||||| |||||||| ||||||| |||||| || |||||| | ||| ||||||||||    
T  50047357 attgaagatcaatggtacttaaaaggttattgaagacaatacaaaatgaagaaaattcattttaagttcctaggagttttcgaacagaagaacgat 50047452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 30675664 - 30675744
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 82  Q
    ||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||    
T  30675664 aagattgaa-atcaatggttcttagaaggtttttgaagataatacaaagtgaagaaaattcatttcaagttcctaggagttt 30675744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 266 - 450
Target Start/End: Original strand, 30675871 - 30676058
Alignment:
Q  266 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag----gggt 361  Q
    ||||||| |||||||||||| ||||||||||| |  |||||||||||||| ||  || |||||| ||||||||| | ||||||   ||||||    | ||    
T  30675871 cagttttattctcttaaaccctaagtaatcatatgctataaatagagaccattgcactcattatatttcattcagagagctagagattcaagacaagagt 30675970  T
Q  362 aaagcatcagagttccaaggcaggat-tccaacctcatcttgactctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
       ||||||||||| ||||||||||| |||| |||| |||| | |||||||||||||| |||||| ||||||||||||||||||||||||    
T  30675971 cgggcatcagagtttcaaggcaggatctccatcctcctctt-agtctctctagggtatgtttttc-tattgttttgttatgatgtttgtt 30676058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 30781942 - 30782010
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||||||||    
T  30781942 attgaagatcaagggttcttaaaaggttgttgaagacaatacaaagtgaagaaaattgatttcaagttc 30782010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 383
Target Start/End: Complemental strand, 25726348 - 25726214
Alignment:
Q  253 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagt 352  Q
    ||||| |||| ||| |||||||||||||||||| ||||||||||| |  |||||| | ||||| ||  |||||||||| |||||||| ||||||||| ||    
T  25726348 ggtggaaaaaactctgttttcttctcttaaaccctaagtaatcatatgttataaacaaagacctttacacacattattattcattcagaaagctagcggt 25726249  T
Q  353 tca----aggggtaaagcatcagagttccaaggca 383  Q
    |||    |||||| |||||||| ||||||||||||    
T  25726248 tcaagataggggtcaagcatcaaagttccaaggca 25726214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 383
Target Start/End: Complemental strand, 25734756 - 25734622
Alignment:
Q  253 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagt 352  Q
    ||||| |||| ||| |||||||||||||||||| ||||||||||| |  |||||| | ||||| ||  |||||||||| |||||||| ||||||||| ||    
T  25734756 ggtggaaaaaactctgttttcttctcttaaaccctaagtaatcatatgttataaacaaagacctttacacacattattattcattcagaaagctagcggt 25734657  T
Q  353 tca----aggggtaaagcatcagagttccaaggca 383  Q
    |||    |||||| |||||||| ||||||||||||    
T  25734656 tcaagataggggtcaagcatcaaagttccaaggca 25734622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 9328357 - 9328444
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||| |||| | ||||||| || ||||||||| | |||||||||||    
T  9328357 tcaatcgttcttagaaggtttttgaagacaatactaagtgaagaaaattcagtccaagttcctaggagtttccatatggaagaacgat 9328444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25727844 - 25727785
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaattt 60  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  25727844 aagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaattt 25727785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 25736252 - 25736193
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaattt 60  Q
    |||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  25736252 aagattgaagatcaatggttcttggaaggtttttgaagacaatccaaagtgaagaaattt 25736193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 26657666 - 26657749
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 95  Q
    ||||| ||||||| ||||||||||||||||| |||||||||||||| |||||||||||||| || |||||| || ||| |||||    
T  26657666 tcaatagttcttataaggtttttgaagacaaaacaaagtgaagaaaattcatttcaagttcctaggagttttcagacgaaagaa 26657749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 26854255 - 26854184
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||| ||||||||||||| ||| | |||||||||||||||||||||||||| ||||||| ||||||    
T  26854255 aagattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaagaaaattcatttgaagttc 26854184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 52271180 - 52271113
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    |||||||||| |||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||    
T  52271180 aagattgaagttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaa 52271113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 9353209 - 9353289
Alignment:
Q  19 ttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| |||||||||||||| ||||| ||||||||||| |||| | ||||||| |||||||||||| | |||||||||||    
T  9353209 ttcttagaaggtttttgaagaaaatactaagtgaagaaaattcagtccaagttcctatgagtttccatatggaagaacgat 9353289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 9252532 - 9252447
Alignment:
Q  14 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||| ||| |||||||||||||||||||| ||||||||||| |||| | ||||||| ||||||||| || |  ||||||||||    
T  9252532 aatggttattagaaggtttttgaagacaatactaagtgaagaaaattcagtccaagttcctatgagttttcagattgaagaacgat 9252447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 27461111 - 27461070
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27461111 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 27461070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 270 - 387
Target Start/End: Complemental strand, 18300708 - 18300587
Alignment:
Q  270 tttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag----gggtaaag 365  Q
    |||||||||||||||| ||||||||||| |  |||||||| | || |||  ||||||||||||| ||||| ||||| | | |||||||    |||| |||    
T  18300708 tttcttctcttaaaccctaagtaatcatatgttataaatataaacacttgcacacattattttttattcagaaagccaacggttcaagccaagggtcaag 18300609  T
Q  366 catcagagttccaaggcaggat 387  Q
    ||||| ||||||||||||||||    
T  18300608 catcaaagttccaaggcaggat 18300587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 15298805 - 15298735
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||| ||||||||||||||||||||| | ||||||| |||||||| ||||| ||| ||||||||||||||    
T  15298805 aagattcaagatcaatggttcttaaaagttatttgaag-caatacaatgtgaataaaattcatttcaagttc 15298735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 25373925 - 25373996
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||| |||| |||||||||||| |||||| || ||||||||||||  |||||||| ||||||||||||||    
T  25373925 aagattaaagaccaatggttcttagaaggttgtttaagacaatacaagatgaagaaaattcatttcaagttc 25373996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 18300926 - 18300857
Alignment:
Q  13 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 82  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||  | ||||||| ||| || ||||||    
T  18300926 caatggttcttagaaggtttttgaagacaatacagagtgaagaaaaattatttcaaattcctaggagttt 18300857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 23223622 - 23223675
Alignment:
Q  30 tttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 83  Q
    |||||||||||||||||||||||| ||| |||||||||||||| || |||||||    
T  23223622 tttttgaagacaatacaaagtgaaaaaaattcatttcaagttcctaggagtttc 23223675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 23505938 - 23506006
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||| |||  |||   |||||||||||||||||||||||||| ||||||||||||||    
T  23505938 gattgaagatcaatggt-cttggaagacatttgaagacaatacaaagtgaagaaaattcatttcaagttc 23506006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 356
Target Start/End: Original strand, 34533074 - 34533163
Alignment:
Q  267 agttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaa 356  Q
    ||||||||||||||||||  ||||||||||| | |||||||||||||| |||  ||||||| || |||||| | ||| ||| ||||||||    
T  34533074 agttttcttctcttaaactctaagtaatcatatgatataaatagagactcttgcacacattcttattcatttagaaaactaacagttcaa 34533163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19257739 - 19257674
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    ||||||||| |||||  ||||||| ||||| |||||||||||||||||||||||||| || |||||||    
T  19257739 aagattgaacatcaa--gttcttagaaggtctttgaagacaatacaaagtgaagaaaatttatttcaa 19257674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 302 - 447
Target Start/End: Original strand, 50047566 - 50047716
Alignment:
Q  302 tataaatagagacccttttacacattatttttcattcataaagctagcagttcaag----gggtaaagcatcagagttccaaggca--ggat-tccaacc 394  Q
    ||||||||||||||||||  ||||||||| |||||| ||||||||||| ||| |||    |||| || ||| |||||||||||| |  |||| |||| ||    
T  50047566 tataaatagagaccctttctcacattattgttcatttataaagctagcggtttaaggcaagggtcaaacattagagttccaaggaaggggatctccatcc 50047665  T
Q  395 tcatcttgactctctctagggtatatttttcctattgttttgttatgatgttt 447  Q
    || |||||  |||||||||||||| |||||  ||||||||||| |||||||||    
T  50047666 tcctcttg-ttctctctagggtatgttttt-atattgttttgtaatgatgttt 50047716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 9353409 - 9353484
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaag 344  Q
    ||||||||||||||| | |||||||||||||  |||| ||| ||||||||  || |||||||||||||||| ||||    
T  9353409 ttttcttctcttaaatcctaagtaatcattttctatatataaagacccttgcactcattatttttcattcaaaaag 9353484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 26102236 - 26102306
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    |||| |||||||||||| || ||| ||||||||||||||||||||||  ||| |||| ||||| |||||||    
T  26102236 aagaatgaagatcaatgatttttagaaggtttttgaagacaatacaagttgaggaaaattcatctcaagtt 26102306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 31313731 - 31313777
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||    
T  31313731 aagaatgaagatcaatgattcttataaggtttttgaagacaatacaa 31313777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 253 - 318
Target Start/End: Complemental strand, 27460562 - 27460497
Alignment:
Q  253 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    ||||| ||||||| |||||||||||||||| || |||||||| ||  | |||||||||||||||||    
T  27460562 ggtggaaaaagcttagttttcttctcttaacccctaagtaatgatccactataaatagagaccctt 27460497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25730506 - 25730450
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 57  Q
    |||||| ||||||||||||||||  ||||||||||| ||||||  ||||||||||||    
T  25730506 aagatttaagatcaatggttcttggaaggtttttgacgacaatcgaaagtgaagaaa 25730450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Original strand, 18391267 - 18391314
Alignment:
Q  7 gaagatcaatggttcttaaaagg-tttttgaagacaatacaaagtgaa 53  Q
    ||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  18391267 gaagatcaatggttcttaaaaggtttttttaagacaatacaaaatgaa 18391314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 25126667 - 25126730
Alignment:
Q  9 agatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||| ||||||| ||  | |||||| |||||||||| |||||||| ||||||||||||||    
T  25126667 agatcaatagttcttagaaaatctttgaatacaatacaaaatgaagaaaattcatttcaagttc 25126730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 25665701 - 25665634
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||| ||||||||||||| ||  | ||| ||||||||||||||||||||||  |||||| ||||||    
T  25665701 ttgaagttcaatggttcttataaaatatttaaagacaatacaaagtgaagaaaaatcatttgaagttc 25665634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 15416908 - 15416866
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaat 43  Q
    |||| ||||||||||||||||||| ||||||||| ||||||||    
T  15416908 aagaatgaagatcaatggttcttataaggtttttaaagacaat 15416866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 31319541 - 31319504
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaat 43  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  31319541 tgaagatcaatggttcttagaagttttttgaagacaat 31319504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 269 - 329
Target Start/End: Complemental strand, 23519400 - 23519340
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattat 329  Q
    |||||||||||||||||  |||||| ||| |  |||||||||||||||||  |||||||||    
T  23519400 ttttcttctcttaaacccaaagtaaccatatgctataaatagagacccttgcacacattat 23519340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 6e-32; HSPs: 40)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29544699 - 29544797
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||||||    
T  29544699 aagattgaagatcaatgattcttagaaggtttttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacggaagaacgat 29544797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 20470742 - 20470647
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||| ||||||||||||| |||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||| || ||||||||||    
T  20470742 attgaagttcaatggttcttagaaggttcttgaagacaatacaaaatgaagaaaattgatttcaagttcgtatgagtttccagacagaagaacgat 20470647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 20017143 - 20017227
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| |||||| ||||||    
T  20017143 tcaatggttcttagaaggttcttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttacaaacgaaagaac 20017227  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9801809 - 9801712
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||| || ||||||||||| || |||||| |||| |||||||||||    
T  9801809 aagattgaag-tcaatggttcttaaaaggtttttaaagaaaatacaaagtgaggaaaatttatttcaagttcctaggagttttcaaatggaagaacgat 9801712  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 21545762 - 21545668
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 95  Q
    |||||||||||||||||||||||| || || ||||||||||||| |||||||||||| |||||||||||||  || ||||||||| ||| |||||    
T  21545762 aagattgaagatcaatggttcttagaaagtatttgaagacaataaaaagtgaagaaaattcatttcaagtttctaggagtttccagacgaaagaa 21545668  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 221 - 349
Target Start/End: Complemental strand, 21545568 - 21545441
Alignment:
Q  221 aattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctttt 320  Q
    |||||||  |||||||||||||||||||| ||||||| |||  | || |||||||||||||| || |||||||||||||  ||||||||||||||| |      
T  21545568 aattgcccacaacttgtttttcaagctaacacggtggaaaattc-caattttcttctcttaacccctaagtaatcattttctataaatagagacccgtac 21545470  T
Q  321 acacattatttttcattcataaagctagc 349  Q
    |||||||||| ||| |||| |||||||||    
T  21545469 acacattattattctttcagaaagctagc 21545441  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 26 - 99
Target Start/End: Original strand, 7815527 - 7815600
Alignment:
Q  26 aaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| || |||||||||||||    
T  7815527 aaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcataggagttttcagacggaagaacgat 7815600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 21471978 - 21472072
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||| || |||||||| |||||| ||||||| |||||||||||| |||| |||||||||||||| || |||||| || |||||||||||||    
T  21471978 attgaagataaagggttcttagaaggttattgaagaaaatacaaagtgacgaaa-ttcatttcaagttcctaggagttttcatacggaagaacgat 21472072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Original strand, 315356 - 315450
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||| |||  ||||||  |||||| ||||||||||||||||||||| ||| |||||||||||||| || ||||||||| ||| |||||||||    
T  315356 ttgaagaacaacagttctttgaaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagtttccagacgaaagaacgat 315450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 10670499 - 10670417
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaaga 94  Q
    ||||||||||||| ||||||||  |||||||||||||||||| |||  |||||||||||||||| |||||| || ||||||||    
T  10670499 tcaatggttcttagaaggttttctaagacaatacaaagtgaataaaaatcatttcaagttcgtaggagttttcagacggaaga 10670417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 447
Target Start/End: Original strand, 23126536 - 23126751
Alignment:
Q  236 gtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaa----tataaatagagacccttttacacattattt 331  Q
    |||||||||||  ||||||||| |||| |  ||||| |||| |||||||| ||||||||||| ||     ||||||||||||| |||  || ||||||||    
T  23126536 gtttttcaagcagaaacggtggaaaaaacctagtttacttcacttaaaccctaagtaatcatatatatgctataaatagagacacttgcactcattattt 23126635  T
Q  332 ttcattcataaagctagcagttc----aaggggtaaagcatcagagttccaaggcaggattccaacctcatcttgactctctctagggtatatttttcct 427  Q
    || ||||| |||| |||  ||||    || |||| ||||||||||||| ||||||| ||||| | ||||  |||| ||||||||||||| | ||||| ||    
T  23126636 tttattcagaaagttagtggttctaggaaagggtcaagcatcagagtttcaaggcatgattcgatcctc--cttg-ctctctctagggtttgttttt-ct 23126731  T
Q  428 attgttttgttatgatgttt 447  Q
    ||||||||||||||||||||    
T  23126732 attgttttgttatgatgttt 23126751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 4092166 - 4092036
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag- 357  Q
    |||| ||||||||||| ||||| |  | ||||||||||| |  |||||||||||||||||| |||||||||| |||||||| ||||||||| ||| |||     
T  4092166 aaaaactcagttttctactcttcagacctaagtaatcatatgttataaatagagaccctttcacacattattattcattcagaaagctagcggttgaagg 4092067  T
Q  358 ---gggtaaagcatcaga-gttccaaggcag 384  Q
       |||| |||||||||| ||||||||||||    
T  4092066 caagggtcaagcatcagaggttccaaggcag 4092036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 267 - 443
Target Start/End: Complemental strand, 20470442 - 20470266
Alignment:
Q  267 agttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag----gggta 362  Q
    ||||||||||| ||||||| ||||||||||| |  |||||||| ||||| ||| ||| |||||| |||||| | ||||||||| |||||||    ||||     
T  20470442 agttttcttctattaaaccctaagtaatcatatgttataaataaagaccatttaacaaattattattcatttagaaagctagcggttcaagtcaagggtt 20470343  T
Q  363 aagcatcagagttccaaggcaggattccaacctcatcttgactctctctagggtatatttttcctattgttttgttatgat 443  Q
    ||||||||||||||| | | |||||| || ||||||  |   ||||||||||||||  |||| || |||||||||||||||    
T  20470342 aagcatcagagttcctaaggaggattacatcctcattgt---tctctctagggtatgctttt-cttttgttttgttatgat 20470266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 234 - 450
Target Start/End: Original strand, 5636616 - 5636838
Alignment:
Q  234 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattattttt 333  Q
    ||||||||||||||  | | | || |||||||| || ||| |||||||| |  |||||||| ||  | |||||||||||||||||  ||||| | || ||    
T  5636616 ttgtttttcaagctggatcagaggaaaaagctcggtcttcatctcttaatcactaagtaatgatgcactataaatagagacccttgcacacacttttatt 5636715  T
Q  334 cattcataaagctagcagttcaagg----ggtaaagcatcagagttccaaggcag--gat-tccaacctcatcttgactctctctagggtatatttttcc 426  Q
    |||||| |||||||| ||| |||||    ||| |||||||| || | ||||||||  ||| ||||||||| |||||  |||||||||||||| ||||||     
T  5636716 cattcagaaagctagtagtacaaggcaatggtcaagcatcaaagcttcaaggcagatgatctccaacctcctcttgt-tctctctagggtatttttttct 5636814  T
Q  427 tattgttttgttatgatgtttgtt 450  Q
    ||||||||||| ||||||| ||||    
T  5636815 tattgttttgtaatgatgtatgtt 5636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 7493495 - 7493590
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||| ||||||||||||||| ||||||| |||||||| |||| ||| |||||| ||| ||  || |||||| |||| |||||||||||    
T  7493495 attgaagatcaagggttcttaaaaggttattgaagataatacaaaatgaaaaaaattcattccaaatttctaggagttttcaaagggaagaacgat 7493590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 20446384 - 20446475
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 95  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||| |||  |||||| |||||| || |||| | |||| |||||||    
T  20446384 attgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaaaaaaaatcattttaagttcataagagtattcaaatggaagaa 20446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 23125080 - 23125147
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    |||||||||| ||||||||||||| ||| || || |||||||||||||||||||||| ||||||||||    
T  23125080 aagattgaagttcaatggttcttataagattcttaaagacaatacaaagtgaagaaaattcatttcaa 23125147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 7494876 - 7494973
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||| | ||||||||||| |||||   |||||||||||||||||||||||| || |||||||| |  || ||||||||| |||||||||||||    
T  7494876 aagattgaagtt-aatggttcttagaaggtccatgaagacaatacaaagtgaagaaaatttatttcaagattctaggagtttccagacggaagaacgat 7494973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 22067735 - 22067657
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 82  Q
    |||||| ||||| |||||||| |||||| ||||||||||||||||||||| | | |||||||||||||| || ||||||    
T  22067735 attgaaaatcaagggttcttagaaggttgttgaagacaatacaaagtgaaaagaattcatttcaagttcctaggagttt 22067657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 1074635 - 1074703
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||| ||||||||||||||||||| |||||||||||||||  ||||||||  | |||||||||||    
T  1074635 attgaagaccaatggttcttaaaaggttgttgaagacaatacaagatgaagaaaagtaatttcaagttc 1074703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 12358698 - 12358655
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaata 44  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  12358698 aagattgaagatcaatggttcttagaaggtttttgaagacaata 12358655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 314
Target Start/End: Complemental strand, 26839848 - 26839793
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagac 314  Q
    ||||||||||||||||||||||||||| |||||||||||||  |||||||| ||||    
T  26839848 aaaagctcagttttcttctcttaaaccctaagtaatcatttgctataaataaagac 26839793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 269 - 387
Target Start/End: Original strand, 20017429 - 20017551
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg----ggtaaa 364  Q
    ||||||||||| ||||| ||||||||||| |  || ||||| ||||| ||  |||||||||||||||||||||||| |||  ||||||||    ||| ||    
T  20017429 ttttcttctctaaaaccctaagtaatcatatgctacaaataaagacctttacacacattatttttcattcataaagttagtggttcaaggcaagggtcaa 20017528  T
Q  365 gcatcagagttccaaggcaggat 387  Q
     ||| | ||||||||||||||||    
T  20017529 acattaaagttccaaggcaggat 20017551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 259 - 343
Target Start/End: Complemental strand, 7777767 - 7777683
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaa 343  Q
    ||||||||||||||||| ||||||||| ||||||| ||| |  |||||||| ||||||||  ||||||||||   ||||||||||    
T  7777767 aaaagctcagttttcttatcttaaaccctaagtaaccatatgctataaataaagacccttgcacacattattacacattcataaa 7777683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18496744 - 18496815
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||  ||||||||||| || ||| ||||||| |||||||  |||||||| ||||||||||||||    
T  18496744 aagattgaagaataatggttcttagaatgttgttgaagaaaatacaagatgaagaaaattcatttcaagttc 18496815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24596939 - 24596868
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||| ||| |||||| || |||   |||||||||||||||||||||||||| ||||||| ||||||    
T  24596939 aagattgaagttcagtggttcatagaagaaatttgaagacaatacaaagtgaagaaaattcatttgaagttc 24596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 9070584 - 9070646
Alignment:
Q  18 gttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagt 80  Q
    ||||||| ||||||||| ||||||||| |||||||||||  |||| |||||||||||| ||||    
T  9070584 gttcttagaaggttttttaagacaatataaagtgaagaatattcagttcaagttcgtaggagt 9070646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 8308961 - 8308900
Alignment:
Q  11 atcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||||| ||||| ||||||||||||||||| | |||||  ||||| ||||||||    
T  8308961 atcaatggttcttagaaggtctttgaagacaatacaaaataaagaagattcatatcaagttc 8308900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 14649680 - 14649721
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||| ||| ||||||||||||||||||||||    
T  14649680 tgaagatcaatggttattagaaggtttttgaagacaatacaa 14649721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Original strand, 4828998 - 4829038
Alignment:
Q  32 tttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  4828998 tttgaagacaatacaaagtgaagataattcatttcaagttc 4829038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 339
Target Start/End: Original strand, 9070814 - 9070942
Alignment:
Q  211 tgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatag 310  Q
    |||||||| |||||||||||| ||| |||  ||||||  |  ||||  |||||| ||  |||||||||||||| | ||||||||| |||  |||||||||    
T  9070814 tgtgggcagaaattgcctgcagcttatttggcaagctggattggtgcaaaaagcacaaatttcttctcttaaaacctaagtaatccttttctataaatag 9070913  T
Q  311 agacccttttacacattatttttcattca 339  Q
    ||||||||  ||  |||||| ||||||||    
T  9070914 agacccttgcacttattattattcattca 9070942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 30405773 - 30405825
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 53  Q
    |||||||||| |||||| |||||| ||||| |||||| |||||||||||||||    
T  30405773 aagattgaagttcaatgattcttagaaggtatttgaatacaatacaaagtgaa 30405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 2630409 - 2630331
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 82  Q
    |||||||||||| |||||||||  |||| || ||||||||| ||| |||||| | || ||||||||||| || ||||||    
T  2630409 attgaagatcaagggttcttaattggttgttaaagacaataaaaattgaagacaattaatttcaagttcctaggagttt 2630331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 5312719 - 5312665
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 57  Q
    ||||||| || ||||||||||| ||| ||||||||||||||||||  ||||||||    
T  5312719 gattgaacataaatggttcttagaagatttttgaagacaatacaagatgaagaaa 5312665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 10253675 - 10253629
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||||| | |||| | ||||||||||||||||||||    
T  10253675 aagattgaagatcaatgatacttatagggtttttgaagacaatacaa 10253629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 7777619 - 7777575
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||||    
T  7777619 tctctctagggtatgtttttc-tattgttttattatgatgtttgtt 7777575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 339
Target Start/End: Complemental strand, 10670206 - 10670133
Alignment:
Q  266 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 339  Q
    ||||| ||||||| |||||| ||   ||||||||  |||||||||||||||||  || ||||||||||||||||    
T  10670206 cagttatcttctcctaaaccctacccaatcattttctataaatagagacccttgcactcattatttttcattca 10670133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 314
Target Start/End: Original strand, 3400267 - 3400315
Alignment:
Q  266 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagac 314  Q
    |||||||||||||||||||| |||||| |||| |  |||||||||||||    
T  3400267 cagttttcttctcttaaaccctaagtagtcatatgctataaatagagac 3400315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 7777959 - 7777895
Alignment:
Q  18 gttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 82  Q
    |||||||||||||| |||| ||||||| ||||||||||||  ||||  ||||||| || ||||||    
T  7777959 gttcttaaaaggttgttgaggacaatataaagtgaagaaaaatcataccaagttcctaagagttt 7777895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 15 - 47
Target Start/End: Complemental strand, 28951895 - 28951863
Alignment:
Q  15 atggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||| |||||||||||||||||||||||||||    
T  28951895 atggtacttaaaaggtttttgaagacaatacaa 28951863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 30998953 - 30999048
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||| ||||| |||||||||||||| ||||||||| ||||||||||||||||    
T  30998953 attgaagatcaagggttcttagaaggttgttgaagacaatacaaagtggagaaaattcatttcaagttcatatgagttttcaaacggaagaacgat 30999048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 27417194 - 27417100
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||| |||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||||||  | ||||||||| |||||||||||||    
T  27417194 ttgaagaccaatggttctaagaaggtttttgaaaacaatacaaagtgaagaaaattcatttcaagttccaaggagtttccagacggaagaacgat 27417100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 6 - 83
Target Start/End: Complemental strand, 16593681 - 16593604
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 83  Q
    |||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||||    
T  16593681 tgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttc 16593604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 18818886 - 18818952
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||| |||||||||    
T  18818886 tgaagattaatggttcttagaaggtctttgaagacaatacaaagtgaagaaaattcaattcaagttc 18818952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 233 - 384
Target Start/End: Complemental strand, 21844527 - 21844372
Alignment:
Q  233 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttt 332  Q
    ||||||||||||| || | |||||| |||| | |||||||||||||||||||| |||||||| ||| |||||||||||| |||| |  ||||| | || |    
T  21844527 cttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaataattcaatataaatagaaacccctgcacacacttttat 21844428  T
Q  333 tcattcataaagctagcagttcaag----gggtaaagcatcagagttccaaggcag 384  Q
    | |||||  |||||||| |||||||    |||| ||||||||||| | ||||||||    
T  21844427 ttattcagtaagctagcggttcaaggcatgggtcaagcatcagagcttcaaggcag 21844372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 18236238 - 18236167
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||||  |||||||| ||||||||||||||    
T  18236238 aagattgaaggccaatggttcttagaaggttgttgaagacaatacaagatgaagaaaattcatttcaagttc 18236167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 25474219 - 25474314
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||| |||| |||||||| |||||| |||||||||||| |||||||||||| ||||||||| |||| ||  |||||||| | | |||||||||    
T  25474219 attgaaggtcaagggttcttagaaggttgttgaagacaatataaagtgaagaaaattcatttcaggttcctagtagtttccagatgaaagaacgat 25474314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 21842900 - 21842815
Alignment:
Q  233 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    ||||||||||||| || | |||||| |||| | |||||||||||||||||||| |||||||| ||| |||||||| ||| ||||||    
T  21842900 cttgtttttcaagttagatcggtggaaaaaacacagttttcttctcttaaaccctaagtaataattcaatataaacagaaaccctt 21842815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 21505070 - 21505007
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    ||||||| |||||||||| | ||||||||||||||||||||||  |||||||| ||||||||||    
T  21505070 ttgaagaccaatggttctgagaaggtttttgaagacaatacaagttgaagaaaattcatttcaa 21505007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 22525744 - 22525685
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||| || ||||||||||    
T  22525744 tcaatggttcttagaaggtatttgaagacaacacaaagtgaagaaaatttatttcaagtt 22525685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 14921974 - 14921918
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 57  Q
    |||||||||| ||||||||||||| ||||| | || |||||||||||||||||||||    
T  14921974 aagattgaagttcaatggttcttagaaggtatatgtagacaatacaaagtgaagaaa 14921918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 17415098 - 17415028
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||| ||||||||||||||  || | ||||||||||| | |||||||||||| ||||||||||||||    
T  17415098 aagattgaa-atcaatggttcttaggagttatttgaagacaacaaaaagtgaagaaaattcatttcaagttc 17415028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 19541216 - 19541286
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| |||||||||||| ||||| ||  ||||||||||||||| |||||  ||||||||||||||    
T  19541216 aagattgaagaccaatggttcttataaggtatta-aagacaatacaaagttaagaatcttcatttcaagttc 19541286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 31274138 - 31274205
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    ||||||||| ||||||||||| ||||| ||||||||||||| ||  |||||||| |||||| ||||||    
T  31274138 attgaagattaatggttcttagaaggtctttgaagacaatataagttgaagaaaattcattccaagtt 31274205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 35707985 - 35708080
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| ||||| | |||||| |||||| |||||||||||||||| |||| ||| || |||||||||||  | |||||| || ||| |||||||||    
T  35707985 attgaatatcaaggtttcttagaaggttgttgaagacaatacaaaatgaacaaaatttatttcaagttctcaggagttttcagacgaaagaacgat 35708080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 9504501 - 9504546
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    |||||||||||||| ||||| | |||||||||||||||||||||||    
T  9504501 tctctctagggtatgttttttccattgttttgttatgatgtttgtt 9504546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 9515867 - 9515912
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    |||||||||||||| ||||| | |||||||||||||||||||||||    
T  9515867 tctctctagggtatgttttttccattgttttgttatgatgtttgtt 9515912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24188149 - 24188217
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagt 70  Q
    ||||||||||| |||| | ||||| || ||||||||||||||||||||||||||||  |||||| |||||    
T  24188149 aagattgaaga-caatagatcttagaaagtttttgaagacaatacaaagtgaagaagattcattccaagt 24188217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 31262176 - 31262241
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttc 66  Q
    |||||||||||| |||||||||||  |||| ||||||||||||| ||  |||||||| ||||||||    
T  31262176 aagattgaagattaatggttcttagtaggtctttgaagacaatataagttgaagaaaattcatttc 31262241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 381
Target Start/End: Complemental strand, 21504264 - 21504131
Alignment:
Q  252 cggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcag 351  Q
    |||||| ||||||||||||||||||||||||| |  ||||||||||    |||||||||| ||||||  ||||| | || |||||| | |||||||   |    
T  21504264 cggtggaaaaagctcagttttcttctcttaaatccgaagtaatcataggttataaatagatacccttacacacacttttattcatttagaaagctaatgg 21504165  T
Q  352 ttcaagg----ggtaaagcatcagagttccaagg 381  Q
    |||||||    ||| |||||||| ||||||||||    
T  21504164 ttcaaggaaaaggtcaagcatcaaagttccaagg 21504131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 34063745 - 34063705
Alignment:
Q  32 tttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||||||||||||||||| ||||||| ||||||    
T  34063745 tttgaagacaatacaaagtgaagaaaattcatttgaagttc 34063705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1732730 - 1732801
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||| |||||| ||  | ||||||| ||||||||| |||| ||| || |||||||||||    
T  1732730 aagattgaagatcaatgattcttagaatatatttgaaggcaatacaaaatgaataaaatttatttcaagttc 1732801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 1733275 - 1733365
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    ||||||||||  ||||||| || ||| ||||||| ||||||||||||| ||| ||||||| |  ||| || |||||| || ||||||||||    
T  1733275 tgaagatcaagagttcttagaatgttgttgaagataatacaaagtgaataaaattcattttagattcctaggagttttcagacggaagaac 1733365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 15829536 - 15829610
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattattttt 333  Q
    |||||| || ||||||||||||||||| ||| |||| |||  |||||||||||||| |||  | |||||||||||    
T  15829536 aaaagcccaattttcttctcttaaaccataactaattattggatataaatagagacgcttgcagacattattttt 15829610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 19949469 - 19949436
Alignment:
Q  24 aaaaggtttttgaagacaatacaaagtgaagaaa 57  Q
    |||||||| |||||||||||||||||||||||||    
T  19949469 aaaaggttattgaagacaatacaaagtgaagaaa 19949436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 21849004 - 21848963
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    |||| ||||||||||||||||||||||| ||| |||||||||    
T  21849004 tgaaaatcaatggttcttaaaaggttttggaacacaatacaa 21848963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 450
Target Start/End: Original strand, 30999357 - 30999401
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    |||||||||||||| |||||| ||||||||| ||||||||||||||    
T  30999357 tctctctagggtatgtttttc-tattgttttcttatgatgtttgtt 30999401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 259 - 442
Target Start/End: Complemental strand, 19218872 - 19218684
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag- 357  Q
    |||||| |||||||||||||||||||||||||||||||| |  ||||||||||||||||| |||||||| || |||||| ||||||||| | |||||||     
T  19218872 aaaagcccagttttcttctcttaaaccttaagtaatcatattctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaaga 19218773  T
Q  358 ---gggtaaagcatcagagttccaaggcaggat---tccaacctcatcttgactctctctagggtatatttttcctattgttttgttatga 442  Q
       |||| ||||||||||||| ||||||||  |   |||| |||| |||||  ||||||||| ||||  |||| |||||||||||||||||    
T  19218772 caagggtcaagcatcagagtt-caaggcagagtatctccatcctcctcttg-ttctctctagagtatcctttttctattgttttgttatga 19218684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 450
Target Start/End: Original strand, 10342165 - 10342388
Alignment:
Q  233 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttt 332  Q
    |||||||||| |||||||||||||| |||| || ||||||||||||||||||| |||||||||||||| |||||||| |||| |||  ||| |||||| |    
T  10342165 cttgtttttctagctaaaacggtggaaaaaacttagttttcttctcttaaaccctaagtaatcatttactataaatatagactcttgcacatattattat 10342264  T
Q  333 tcattcataaagctagcagttcaa----ggggtaaagcatcagag-ttccaaggcag--ga-ttccaacctcatcttgactctctctagggtatattttt 424  Q
    | ||||| |||| |||  ||||||     |||| || |||||||| || ||||||||  || ||||| |||| |||||  ||||||||||||||||||||    
T  10342265 taattcagaaagttagtggttcaaagcgagggtcaaacatcagagttttcaaggcagatgatttccatcctcctcttg-ttctctctagggtatattttt 10342363  T
Q  425 cctattgttttgttatgatgtttgtt 450  Q
     ||||| |||||||||||||| ||||    
T  10342364 -ctattattttgttatgatgtatgtt 10342388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10341966 - 10342064
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||  |||  ||||||||||||| || ||||||| | |||||||||||||    
T  10341966 aagattgaagatcagtggttcttagaaggtttttgaagacaatacaaagtgagaaaaactcatttcaagttcctaggagtttctagacggaagaacgat 10342064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 25883285 - 25883377
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    |||||||||||| |||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| ||||||    
T  25883285 attgaagatcaagggttcttagaaggttgttgaagacaatacaaagtgaagaaaattcatttcaagttcctaggagttttcagacgaaagaac 25883377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 19219146 - 19219079
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||    
T  19219146 aagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtgaataaaattcatttcaa 19219079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Original strand, 11521350 - 11521442
Alignment:
Q  7 gaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||| |||| ||| |||||| ||||||| ||||||||| ||||||| |||||||||||||| || |||||| || |||||||||||||    
T  11521350 gaagatcaagggttgttagaaggttgttgaagataatacaaagcgaagaaaattcatttcaagttcctaggagttttcagacggaagaacgat 11521442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 18474349 - 18474420
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||  |||||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  18474349 aagattgaatttcaatggtacttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttc 18474420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 19543059 - 19542988
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||  ||||| ||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  19543059 aagattgaatttcaatagttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttc 19542988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 1475211 - 1475117
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||  ||||||| |||||| ||||||| ||||||||||||||||| || ||||||||||| || |||||| || ||| |||||||||    
T  1475211 ttgaagatcaagagttcttagaaggttattgaagataatacaaagtgaagaaaatttatttcaagttcctaggagttttcagacgaaagaacgat 1475117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 18065982 - 18066072
Alignment:
Q  8 aagatcaatggttctta-aaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 97  Q
    |||| |||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||| ||| || ||||||||||||  |||||||    
T  18065982 aagaccaatggttcttagaaagttttttgaagaaaatacaaagtgaagaaaattcatttcaacttcctaggagtttccaaaccaaagaacg 18066072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 19263842 - 19263769
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttg---aagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    ||||||||||||||||||||| || |||||||||    |||||||||||||||||||||| |||||||||||||    
T  19263842 aagattgaagatcaatggttcatagaaggtttttttttaagacaatacaaagtgaagaaaattcatttcaagtt 19263769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 220 - 446
Target Start/End: Complemental strand, 2729302 - 2729078
Alignment:
Q  220 aaattgcctgcaacttgtttttcaagctaaaacggtgg-taaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    |||||||||||||||| |||||||||||||||| ||||  |||||| || |||||||||| | |||| |||||||  ||||  |||||||||||| ||||    
T  2729302 aaattgcctgcaacttatttttcaagctaaaacagtggaaaaaagcacatttttcttctcat-aaccctaagtaactatttgctataaatagagatcctt 2729204  T
Q  319 ttacacattatttttcattcataaagctagcagttcaag----gggtaaagcatcagagttccaaggca---ggattccaacctcatcttgactctctct 411  Q
         |||||   |||||||| ||||||||  |||||||    |||| |||||||||||||| ||||||   ||  | || ||||||||||  |||||||    
T  2729203 ----gcatta---ttcattcagaaagctagaggttcaaggtaagggtcaagcatcagagttcaaaggcagatggtcttcatcctcatcttg-ttctctct 2729112  T
Q  412 agggtatatttttcctattgttttgttatgatgtt 446  Q
    | ||||||||||| ||| |||||||||||||||||    
T  2729111 atggtatattttt-ctactgttttgttatgatgtt 2729078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 12573472 - 12573540
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| | || ||| |||||| |||||||||||||| |||||||||| || |||||||||||    
T  12573472 attgaagatcaaggtttgttagaaggttgttgaagacaatacacagtgaagaaaatttatttcaagttc 12573540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 13549936 - 13550004
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| | || ||| |||||| |||||||||||||| |||||||||| || |||||||||||    
T  13549936 attgaagatcaaggtttgttagaaggttgttgaagacaatacacagtgaagaaaatttatttcaagttc 13550004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 5632477 - 5632407
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| ||| |||||||| ||||| |||||||| |||| ||| |||||||| ||||||||||||||    
T  5632477 aagattgaaga-caacggttcttataaggtatttgaagataataaaaattgaagaaaattcatttcaagttc 5632407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 259 - 318
Target Start/End: Original strand, 16970882 - 16970941
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    |||| |||| ||||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  16970882 aaaaactcaattttcttctcttaaaccctaagtaatcatatgctataaatagagaccctt 16970941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 21018059 - 21018154
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||| ||||||||  || ||  |||||||||| |||||||| ||||| || |||||||||||||| || || ||| |||| |||||||||||    
T  21018059 attgaagaccaatggtttctataacttttttgaagataatacaaaatgaaggaaattcatttcaagttcctaggaatttacaaatggaagaacgat 21018154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 2729557 - 2729484
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttg--aagacaatacaaagtgaagaaatttcatttcaagttcgta 75  Q
    |||||||||||| |  |||||||||||||||   |||||||||||||||||| |||  ||||||||||||||||    
T  2729557 attgaagatcaacgactcttaaaaggttttttttaagacaatacaaagtgaataaaaatcatttcaagttcgta 2729484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 8402487 - 8402415
Alignment:
Q  1 aagattgaagatcaatggttctta-aaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| | |||||||||  |||||| |||||||| |||| |||||||||||  ||||||||||||||    
T  8402487 aagattgaagaactatggttcttcgaaaggtatttgaagaaaatataaagtgaagaacattcatttcaagttc 8402415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Complemental strand, 23908206 - 23908110
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacg 97  Q
    |||||| ||||||||||||| ||| || |||||||||||||||||||| ||  |||| |||||| ||| |||  | || |||| ||| |||||||||    
T  23908206 aagatttaagatcaatggtttttagaaagtttttgaagacaatacaaattggggaaaattcattccaaattccaaggaatttcaaaaaggaagaacg 23908110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 99
Target Start/End: Complemental strand, 33914473 - 33914405
Alignment:
Q  31 ttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||| ||| |||||| | |||| ||||||||| | || |||||||||||| |||||||||||||    
T  33914473 ttttgaagataattcaaagtaaggaaaattcatttcaggctcttatgagtttccatacggaagaacgat 33914405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 358
Target Start/End: Original strand, 11475300 - 11475391
Alignment:
Q  267 agttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg 358  Q
    ||||||||||| |||| || |||||||| || |||||||||||||||| |||  ||||  | || |||||||| ||||||||| || |||||    
T  11475300 agttttcttcttttaacccctaagtaatgatgtaatataaatagagactcttgcacactcttttattcattcagaaagctagcggtgcaagg 11475391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 266 - 357
Target Start/End: Complemental strand, 19263558 - 19263467
Alignment:
Q  266 cagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag 357  Q
    |||||||||||||||||||| ||||| ||||| |  |||||| |||||  ||| |||||||| || |||||| | |||||||  ||||||||    
T  19263558 cagttttcttctcttaaaccctaagtgatcatattctataaaaagagatgcttgtacacattcttattcatttagaaagctaaaagttcaag 19263467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 27415350 - 27415444
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||| || | ||||||| || ||||||| ||||| || |||||||||||| |||||||||| ||| || ||||||| | ||| |||||||||    
T  27415350 attgaagaccattagttcttagaatgtttttggagaca-taaaaagtgaagaaaattcatttcaacttcctaggagtttcaagacgaaagaacgat 27415444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 11475028 - 11475078
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 53  Q
    |||| ||||| ||||||||||| ||| | ||||||||||||||||||||||    
T  11475028 gattcaagataaatggttcttagaagatatttgaagacaatacaaagtgaa 11475078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 25188937 - 25188983
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    |||| |||| ||||||||||||||| |||||||| ||||||||||||    
T  25188937 aagaatgaatatcaatggttcttaagaggttttttaagacaatacaa 25188983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 16970645 - 16970697
Alignment:
Q  5 ttgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 57  Q
    ||||||| ||| |||||||| |||||||||||||| |||||||  ||||||||    
T  16970645 ttgaagaccaacggttcttagaaggtttttgaagaaaatacaagatgaagaaa 16970697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 30355496 - 30355591
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| |||||||| ||| ||||||||||||||  | ||||||||| ||||||||||    
T  30355496 aagattgaagatcaatcgttcttagaaggtttttgaagacaataaaaagtgaataaaattcatttcaagttcacaggagtttccagacggaagaac 30355591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 26499782 - 26499712
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||    
T  26499782 aagattgaagatcaatggttcttagaaggtttttgaagacaatacaaagtaaagaaaattcatttcaagtt 26499712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 17860381 - 17860286
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||  |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||| || |||||||||  || |||||||||    
T  17860381 attgaaggacaatggttcttagaaggtttttgtagacaatacaaagtgaagaaaattcatttcaagttcctaggagtttccagtcgaaagaacgat 17860286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 209 - 347
Target Start/End: Complemental strand, 19670342 - 19670204
Alignment:
Q  209 actgtgggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaat 308  Q
    ||||||| |||||||| |||||||||| ||||||||||||||||||||| ||  || || ||||| || |||||| | ||||||||||  || ||||| |    
T  19670342 actgtggacataaatttcctgcaacttctttttcaagctaaaacggtggaaatcgcccaattttcctcacttaaatcctaagtaatcaaatactataatt 19670243  T
Q  309 agagacccttttacacattatttttcattcataaagcta 347  Q
    |||||| |||| | |||||||| |||||| | |||||||    
T  19670242 agagactctttcagacattattattcatttagaaagcta 19670204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 15575106 - 15575174
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| |||||||| |||||  ||||||||||||||||||||||||| ||||||||||||||    
T  15575106 attgaagatcaagggttcttagaaggtcgttgaagacaatacaaagtgaagaaaattcatttcaagttc 15575174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33638265 - 33638317
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 53  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  33638265 aagattgaagatcaatggttcttataaggtctttgaagataatacaaagtgaa 33638317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33638440 - 33638388
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 53  Q
    |||||||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  33638440 aagattgaagatcaatggttcttataaggtctttgaagataatacaaagtgaa 33638388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 435
Target Start/End: Complemental strand, 30236017 - 30235866
Alignment:
Q  286 ttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag----gggtaaagcatcagagttccaagg 381  Q
    |||||||||||| |  ||||||| |||||| ||| ||||||||||||| ||||| ||| ||||| |||||||    |||| || ||||||||||  ||||    
T  30236017 ttaagtaatcatatgctataaattgagaccgtttcacacattattttttattcagaaaactagcggttcaagaaaagggtcaaacatcagagttttaagg 30235918  T
Q  382 caggattccaacctcatcttgactctctctagggtatatttttcctattgtttt 435  Q
     |||||| |  |||| |||||  |||||||||||||| ||||| ||||||||||    
T  30235917 taggatttcttcctcctcttg-ttctctctagggtatgttttt-ctattgtttt 30235866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 24507377 - 24507307
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| |||||||| ||| ||| ||| |||||| ||||||||||||||||| || |||||||||||    
T  24507377 aagattgaaga-caatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttc 24507307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 15998708 - 15998769
Alignment:
Q  20 tcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtt 81  Q
    ||||| |||||| ||| |||||||||||||||||| || |||||||||||||| || |||||    
T  15998708 tcttagaaggttgttgtagacaatacaaagtgaagcaaattcatttcaagttcctaggagtt 15998769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Complemental strand, 13723387 - 13723349
Alignment:
Q  411 tagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  13723387 tagggtatatttttc-tattgttttgttatgatgtttgtt 13723349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 13723894 - 13723840
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagaga 313  Q
    |||||| |||||||||||||||||||| ||| ||||||| |  ||||||||||||    
T  13723894 aaaagcccagttttcttctcttaaaccctaattaatcatatgctataaatagaga 13723840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 12972056 - 12971971
Alignment:
Q  233 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    |||||||||||||||  | |||||  |||||| ||||||||||| ||||| || || ||||| ||  | |||||||||||||||||    
T  12972056 cttgtttttcaagctggaccggtgcaaaaagcccagttttcttcccttaacccctacgtaatgatgcactataaatagagaccctt 12971971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 26512709 - 26512668
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  26512709 tgaagatcaatggttcttaaaaggtctgtgaacacaatacaa 26512668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 26517825 - 26517784
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||||||||||||| | |||| |||||||||    
T  26517825 tgaagatcaatggttcttaaaaggtctgtgaacacaatacaa 26517784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 34)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 259 - 452
Target Start/End: Complemental strand, 15213431 - 15213239
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaag- 357  Q
    |||||||||||||||||||||| |||| ||||||||||| |  ||||||||||||||||   | ||||||||||||||||| ||||||||| |||||||     
T  15213431 aaaagctcagttttcttctcttcaaccataagtaatcatatgctataaatagagaccctaggatacattatttttcattcagaaagctagcggttcaagg 15213332  T
Q  358 ---gggtaaagcatcagagttccaaggcaggattccaacctcatcttgactctctctagggtatatttttcctattgttttgttatgatgtttgtttc 452  Q
       |||| | ||||||||||| ||||||   || ||| |||| || ||  ||| |||||||||| ||||| | ||| |||||||||||||||||||||    
T  15213331 caagggtcatgcatcagagtttcaaggc---atcccatcctcctcatg-ttctttctagggtatgttttt-caattattttgttatgatgtttgtttc 15213239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 16054476 - 16054571
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||| |||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||| || ||||||||| ||  |||||||||    
T  16054476 attgaagatcaagggttcttagaaggttgttgaagaaaatacaaagtgaagaaaattcatttcaagttcctaggagtttccagacaaaagaacgat 16054571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 28901274 - 28901190
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||| || || ||||||| | ||||||||||    
T  28901274 tcaatggttcttataaggtttctgaagacaatacaaagtgaagaaaattcatttcaagctcctaggagtttctagacggaagaac 28901190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 13081867 - 13081788
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 83  Q
    |||||||||||| |||||||| |||||| |||||||||||||||| |||||||| |||||||||||||  ||||||||||    
T  13081867 attgaagatcaagggttcttagaaggttgttgaagacaatacaaaatgaagaaaattcatttcaagtttctatgagtttc 13081788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 16052212 - 16052117
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    |||||| |||| ||||| |||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |  ||||||| | ||||||||||    
T  16052212 aagattaaagaccaatgattcttagaaggtttttgaagacaatacaaaatgaagaaaattcatttcaagttccttggagtttctagacggaagaac 16052117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 23893494 - 23893595
Alignment:
Q  214 gggcataaattgcctgcaacttgttttt-caagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagag 312  Q
    ||||| |||||| ||||||||||||||| ||||| |||| ||||| |||| || ||||||||||||||||||  |||||||| |||| ||||||||||||    
T  23893494 gggcaaaaattgtctgcaacttgttttttcaagccaaaagggtggaaaaaactgagttttcttctcttaaactctaagtaattattttatataaatagag 23893593  T
Q  313 ac 314  Q
    ||    
T  23893594 ac 23893595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 11310180 - 11310094
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| || ||||||||||| || ||||||| | |||||||||||||    
T  11310180 tcaatgattcttagaaggtttttgaaaacaatacaaagtgaagaaaatt-atttcaagttcctaggagtttctagacggaagaacgat 11310094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 28902275 - 28902366
Alignment:
Q  8 aagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||| ||| ||||||| |||||| || |||||| || ||| |||||||||    
T  28902275 aagaccaatggttcttagaaggttattgaagacaatacaaagtgaataaaattcattttaagttcctaggagttttcagacgaaagaacgat 28902366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 14424748 - 14424684
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcattt 65  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||| |||||||    
T  14424748 aagattgaagatcaatggttcttagaaggtttttgaacacaattcaatgtgaagaaaattcattt 14424684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 450
Target Start/End: Complemental strand, 16052004 - 16051781
Alignment:
Q  233 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttt 332  Q
    |||||||||||||||  | |||||| |||| || ||||||||||||||||||| ||  ||||||| |  |||||| ||| ||||||  ||||||| || |    
T  16052004 cttgtttttcaagctggatcggtggaaaaaacttagttttcttctcttaaaccctatttaatcatatgttataaacagacacccttgcacacattcttat 16051905  T
Q  333 tcattcataaagctagcagttcaag----gggtaaagcatcagagttccaagg--caggat-tccaacctcatcttgactctctctagggtatatttttc 425  Q
    ||||| | ||||||| | |||||||    |||| || ||| ||||||| ||||   ||||| || | |||||| |||  |||||||||| ||| |||||     
T  16051904 tcattaagaaagctaacggttcaaggaaagggtcaaccattagagttctaaggtagaggatctctatcctcattttg-ttctctctaggatatgtttttt 16051806  T
Q  426 ctattgttttgttatgatgtttgtt 450  Q
    |||||||||||||||||||||||||    
T  16051805 ctattgttttgttatgatgtttgtt 16051781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28292036 - 28291965
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |  |||||||||||    
T  28292036 aagattgaagattaatggttcttagaaggtctttgaagacaatacaaaatgaagaaaataaatttcaagttc 28291965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 32239467 - 32239537
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    |||||||||| ||||||||| ||| |||||| || ||||||||| |||||||||||| |||||||||||||    
T  32239467 aagattgaagttcaatggtttttataaggttcttaaagacaataaaaagtgaagaaaattcatttcaagtt 32239537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 6888128 - 6888059
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagt 70  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||  |||||||| | | ||||||||    
T  6888128 aagattgaagatcaatggttcttaaaatgtctttgaagacaatacaagttgaagaaaatccgtttcaagt 6888059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 29291952 - 29292016
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    ||||||||||||||||||||| ||||| ||||||||||| | |||||||| ||| ||||||||||    
T  29291952 attgaagatcaatggttcttagaaggtctttgaagacaacagaaagtgaaaaaaattcatttcaa 29292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 30543940 - 30544012
Alignment:
Q  1 aagattgaagatcaatggttctt-aaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||| |||||||||||| ||||| | ||| ||||||||| |||||||||||| ||||||||||||||    
T  30543940 aagattgaagttcaatggttctttaaaagatatttaaagacaatataaagtgaagaaaattcatttcaagttc 30544012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 265 - 450
Target Start/End: Original strand, 32239708 - 32239895
Alignment:
Q  265 tcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg----gg 360  Q
    |||||||||||||||| |||| |||||||||||    ||||||| |||||||||  |||||||||| || ||||| ||||||||| |||||| |    ||    
T  32239708 tcagttttcttctcttgaaccataagtaatcataggctataaattgagacccttgcacacattattatttattcagaaagctagcggttcaatgcaaagg 32239807  T
Q  361 taaagcatcagagttccaaggcaggattccaacctcatcttgactctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    | || ||| ||||||| |||||| |||| || |||| |||||  ||| ||||| | || ||||| |||||| ||||||||||||| ||||    
T  32239808 tcaaacattagagttcaaaggcaagatttcatcctcctcttg-ttctttctagagcatgttttt-ctattgatttgttatgatgtctgtt 32239895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Complemental strand, 5570068 - 5569981
Alignment:
Q  8 aagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 95  Q
    |||| |||||||||||| ||| ||||| ||||||||||||  |||||||| |||||||||| ||| || |||||| || |||||||||    
T  5570068 aagaccaatggttcttagaagctttttaaagacaatacaagatgaagaaaattcatttcaacttcataggagttttcagacggaagaa 5569981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 28859174 - 28859119
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaa 56  Q
    |||||| ||||||||||||||||| | ||||||||||||||||| |||||||||||    
T  28859174 aagattaaagatcaatggttcttagatggtttttgaagacaataaaaagtgaagaa 28859119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 30851035 - 30850964
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||| |||||||| || || |||||| | ||||||||||||||||| || |||||||||||    
T  30851035 aagattgaagatcaacggttcttagaatgtctttgaatataatacaaagtgaagaaaattaatttcaagttc 30850964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 24120415 - 24120501
Alignment:
Q  13 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||| |||||| |||||||| ||||| |||| ||  |||||||| |||||||||||||| || || |||||| |||||||||||||    
T  24120415 caatgtttcttagaaggttttcgaagataataaaagatgaagaaaattcatttcaagttcctaggaatttccagacggaagaacgat 24120501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 22894456 - 22894396
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||| ||||||| | |||||||||||||||||||||||||||||| ||| ||| ||||||    
T  22894456 tcaattgttcttagatggtttttgaagacaatacaaagtgaagaaaattcttttgaagttc 22894396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5153937 - 5154008
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||| || ||  ||||||||||||||||||| ||  |||| ||| ||||||||||||||    
T  5153937 aagattgaagatcaatgattattggaaggtttttgaagacaatataacatgaataaaattcatttcaagttc 5154008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 5569841 - 5569790
Alignment:
Q  267 agttttcttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    |||||| |||||||||||| |||||||||||||  |||||||||||||||||    
T  5569841 agtttttttctcttaaaccctaagtaatcatttgttataaatagagaccctt 5569790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 13583453 - 13583403
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaa 53  Q
    |||||||| ||||||||||||| ||| | ||||||||||||||||||||||    
T  13583453 gattgaagttcaatggttcttagaagatatttgaagacaatacaaagtgaa 13583403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 31436652 - 31436719
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||| |||||||||||||||   ||| |||||||||||||||||||||| ||| || |||||||||||    
T  31436652 aagattgacgatcaatggttctta---ggtatttgaagacaatacaaagtgaaaaaaatt-atttcaagttc 31436719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 11437602 - 11437670
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||| ||||||||||||| |||   ||||||||||||||| |||||||| | ||||||| ||||||    
T  11437602 attgaagttcaatggttcttagaagacatttgaagacaatacagagtgaagataattcatttgaagttc 11437670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 12956660 - 12956732
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaaga-aatttcatttcaagttc 72  Q
    |||| ||||||||||| ||| ||  ||||||||| |||| ||||||||||||||| || ||||||||||||||    
T  12956660 aagactgaagatcaattgtttttggaaggttttttaagataatacaaagtgaagagaaattcatttcaagttc 12956732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 318
Target Start/End: Complemental strand, 24927519 - 24927475
Alignment:
Q  274 ttctcttaaaccttaagtaatcatttaatataaatagagaccctt 318  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||    
T  24927519 ttctcttaacccctaagtaatcatctaatataaatagagaccctt 24927475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24696761 - 24696832
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagt-gaagaaatttcatttcaagtt 71  Q
    ||||||||||| || | ||||||| |||||||||||||| ||||||||||  || ||| |||||||||||||    
T  24696761 aagattgaagaccacttgttcttagaaggtttttgaagaaaatacaaagtaaaaaaaaattcatttcaagtt 24696832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 24120669 - 24120751
Alignment:
Q  233 cttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacc 315  Q
    ||||||||| ||||||   ||||||  ||||| || ||||||||||||||||  ||||||||||| |  ||||||||||||||    
T  24120669 cttgtttttaaagctaggtcggtggataaagcccaattttcttctcttaaacactaagtaatcatatgctataaatagagacc 24120751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 27097720 - 27097666
Alignment:
Q  18 gttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||| ||||| ||||||||||||||||  |||||||| |||| |||||||||    
T  27097720 gttcttagaaggtctttgaagacaatacaagttgaagaaaattcaattcaagttc 27097666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 14977021 - 14976952
Alignment:
Q  27 aggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    ||||||||||||| |||||||||||| |||| || |||||||| |  ||  |||||||| ||||||||||    
T  14977021 aggtttttgaagataatacaaagtgatgaaaattaatttcaagcttctagaagtttccagacggaagaac 14976952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 99
Target Start/End: Complemental strand, 29047267 - 29047178
Alignment:
Q  10 gatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| | |||||| |||||||||||||||||| |||| ||||||||   || |  |||||| ||||||||||||| |  |||||||||    
T  29047267 gatcaaggattcttataaggtttttgaagacaatgcaaaatgaagaaaaaccaatctaagttcctatgagtttccaagcaaaagaacgat 29047178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 13304987 - 13305026
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgt 445  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  13304987 tctctctagggtatattttt-ctattgttttcttatgatgt 13305026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 9e-25; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 17026619 - 17026537
Alignment:
Q  14 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||||||||| ||||||||||    
T  17026619 aatggttcttaaaaagtttttgaagacaatacaaagtgaagaaaattaatttcaagttcctaggagtttccagacggaagaac 17026537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 31859833 - 31859765
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||    
T  31859833 attgaagatcaatggttcttagaaggtatttgaagacaatacaaagtgaagaaaatttatttcaagttc 31859765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 15192385 - 15192480
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||||||||| | |||||||||||||| || ||||||  | |||||||||||||    
T  15192385 attgaagaccaatggttcttagaaggttgttgaagacaattcaaagtgaagacaattcatttcaagttcctaggagtttttagacggaagaacgat 15192480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 51884784 - 51884879
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||| || ||||| ||| || ||||| ||||||||||||||||||| || ||||||||||| ||||||||| || |||||||||||||    
T  51884784 attgaagatcaagggctcttagaagattgttgaatacaatacaaagtgaagaaaattaatttcaagttcctatgagttttcagacggaagaacgat 51884879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 18898163 - 18898259
Alignment:
Q  2 agattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||| ||| |||||||||||||||||||||| |||||||||||| |||||| |||||||||||||| || || ||| || ||| |||||||||    
T  18898163 agattgaag-tcagtggttcttaaaaggtttttgaatacaatacaaagtaaagaaaattcatttcaagttcctaggatttttcagacgtaagaacgat 18898259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 1695764 - 1695684
Alignment:
Q  19 ttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| |||||| ||||||||||||||||||||| ||| |||||||||||||| || |||||| |||||| |||||||||    
T  1695764 ttcttagaaggttgttgaagacaatacaaagtgaataaaattcatttcaagttcctaggagtttacaaacgaaagaacgat 1695684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 12111252 - 12111169
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 95  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||  || |||||| ||||| ||||||    
T  12111252 tcaatggttcttataaggttttttaagataatacaaagtgaagaaaattcatttcaagtttctaggagttttcaaacagaagaa 12111169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 25315160 - 25315069
Alignment:
Q  8 aagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||| |||||||||||||| ||| |||||||||||||||  | ||| || |||||||||||||| || ||||||||| |||||||||||||    
T  25315160 aagataaatggttcttaaaatgttgttgaagacaatacaagataaagtaaattcatttcaagttcctaagagtttccatacggaagaacgat 25315069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 27302959 - 27303054
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| || || |||||||| |||||||||||||||| || |||||||||||| ||||||| |||||| || |||||| || |||||||||||||    
T  27302959 attgaacattaagggttcttagaaggtttttgaagacattataaagtgaagaaaattcattttaagttcctaggagttttcagacggaagaacgat 27303054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 5906698 - 5906600
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||| ||||| ||||||||||| |||||||||||||| |||||||||| |||||| |||||||||| ||| ||  | |||||| || ||||||||||    
T  5906698 aagatttaagattaatggttcttagaaggtttttgaagataatacaaagttaagaaaattcatttcaaattcataaaaatttccagacagaagaacgat 5906600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 234 - 344
Target Start/End: Complemental strand, 12111029 - 12110919
Alignment:
Q  234 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattattttt 333  Q
    |||||| |||||||| | |||||  |||  |||| ||||||||||||||||| |||| |||||||||||||||||||| || |||  || ||||||||||    
T  12111029 ttgtttctcaagctagatcggtgcaaaattctcaattttcttctcttaaaccctaagaaatcatttaatataaatagatacgcttgcactcattattttt 12110930  T
Q  334 cattcataaag 344  Q
    |||||| ||||    
T  12110929 cattcaaaaag 12110919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 47024700 - 47024603
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||| | || ||||||||||| || |||||| || | |||||||||||    
T  47024700 aagattgaag-tcaatggttcttagaaggtttttgaaaacagtacaaagtgaagagaatttatttcaagttcctaggagttttcagatggaagaacgat 47024603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 19601980 - 19602048
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||    
T  19601980 gattgaaga-caatggttcttaaaaggtttttgaagacaataaaaagtggagaaaattcatttcatgttc 19602048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 339
Target Start/End: Original strand, 15192667 - 15192747
Alignment:
Q  259 aaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 339  Q
    ||||||||||||||||||||||||||  |||||||||||||  ||||||||||||  ||| ||| ||||||| ||||||||    
T  15192667 aaaagctcagttttcttctcttaaactctaagtaatcattttctataaatagagattcttgtacccattattattcattca 15192747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 17187352 - 17187422
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    |||||||||| ||| ||||||||| ||| | ||||||||||||||||||| |||||| |||||||||||||    
T  17187352 aagattgaagttcagtggttcttagaagttatttgaagacaatacaaagtaaagaaaattcatttcaagtt 17187422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 34864229 - 34864160
Alignment:
Q  2 agattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||| ||||||||||||| |||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  34864229 agattgaag-tcaatggttcttagaaggtttttgtagacaatacaaaatgaagaaaattcatttaaagttc 34864160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 13064607 - 13064676
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||| ||||||||||||| | ||| |||||||||||| ||||||||| |||||| |||||||||||    
T  13064607 gattgaagttcaatggttcttagagggtatttgaagacaattcaaagtgaacaaatttgatttcaagttc 13064676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 33519211 - 33519276
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaa 68  Q
    |||||||||||||| ||||||| ||||| ||||||||||||||||  |||||||| ||||||||||    
T  33519211 gattgaagatcaatcgttcttagaaggtctttgaagacaatacaagttgaagaaaattcatttcaa 33519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 5676392 - 5676474
Alignment:
Q  14 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaac 96  Q
    |||| |||||| ||||||||||||||||||||||  |||||||| |||||||| ||||  || ||||||| | ||||||||||    
T  5676392 aatgattcttagaaggtttttgaagacaatacaagatgaagaaaattcatttcgagttactaggagtttctagacggaagaac 5676474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 10320143 - 10320058
Alignment:
Q  14 aatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||| ||| ||||| || ||| ||||||||||||||||||| || ||||||||||| || ||||||||| | || ||||||||    
T  10320143 aatggttgttagaaggtcttcgaaaacaatacaaagtgaagaaaatttatttcaagttcctaggagtttccagaaggtagaacgat 10320058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 21077414 - 21077483
Alignment:
Q  3 gattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||| |||||||||||||| |||||  | |||||||||||||| |||| ||| ||||||||||||||    
T  21077414 gattgaatatcaatggttcttagaaggtaatcgaagacaatacaaattgaataaaattcatttcaagttc 21077483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 312
Target Start/End: Complemental strand, 34863976 - 34863884
Alignment:
Q  220 aaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagag 312  Q
    ||||||| |||| |||||||||||||||  | || ||  |||| ||||||||||| |||||||||| | |||||||||||  |||||||||||    
T  34863976 aaattgcatgcagcttgtttttcaagctggatcgatgcaaaaaactcagttttctactcttaaaccctgagtaatcatttgctataaatagag 34863884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 5676646 - 5676709
Alignment:
Q  234 ttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcat 297  Q
    |||||||||||| | || |||||| |||||  |||||||||||||||||||| |||||||||||    
T  5676646 ttgtttttcaagttgaagcggtggaaaaagtccagttttcttctcttaaaccctaagtaatcat 5676709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 23353822 - 23353868
Alignment:
Q  26 aaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||| ||| |||||||||||||||||||||| ||||||||||||||    
T  23353822 aaggtcttttaagacaatacaaagtgaagaaaattcatttcaagttc 23353868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 46647379 - 46647420
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||||||||||||||||| |||| |||||||    
T  46647379 tgaagatcaatggttcttaaaaggtttttaaagataatacaa 46647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 405 - 450
Target Start/End: Complemental strand, 47024278 - 47024234
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgtttgtt 450  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  47024278 tctctctaaggtatatttttc-tattgttttgttatgatgtttgtt 47024234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 9782916 - 9782849
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| |||||||| |||||| || || | ||| ||||||||||||| ||||||||||||||    
T  9782916 attgaagatcaagggttcttagaaggttgttaaaaa-aatgcaaagtgaagaaaattcatttcaagttc 9782849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 349
Target Start/End: Original strand, 21077716 - 21077796
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagc 349  Q
    |||||||||||||| || |||||||| || || ||||||||||||||||| | |||  | || |||||||| |||||||||    
T  21077716 ttttcttctcttaacccctaagtaatgatctactataaatagagacccttgtccactatcttattcattcaaaaagctagc 21077796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 22119803 - 22119870
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||||||| | ||||||||| ||||||| |||||| | ||| || |||||||||||    
T  22119803 attgaagatcaatggttcttagagggtttttgaggacaata-aaagtgtacaaaattaatttcaagttc 22119870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 7024154 - 7024083
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| |||||||||||| ||| || ||||||| |||||||  |||||||| ||||| | ||||||    
T  7024154 aagattgaagaccaatggttcttagaagattcttgaagataatacaagatgaagaaaattcatataaagttc 7024083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 358
Target Start/End: Original strand, 19602227 - 19602310
Alignment:
Q  275 tctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagctagcagttcaagg 358  Q
    |||||||| ||  ||||||||||  | ||||||||||||||||| |||||  | ||||||||||| ||||||||| || |||||    
T  19602227 tctcttaaccccgaagtaatcatgcattataaatagagacccttgtacactctttttttcattcagaaagctagcggtacaagg 19602310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 26159935 - 26160005
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||||||||||||||| ||||| ||||||  ||| | ||  |||||||| ||||||||||||||    
T  26159935 aagattgaagatcaatggttcttataaggtctttgaaatcaa-ataagttgaagaaaattcatttcaagttc 26160005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Complemental strand, 12806484 - 12806443
Alignment:
Q  405 tctctctagggtatatttttcctattgttttgttatgatgttt 447  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  12806484 tctctctaggatatatttttc-tattgttttgttatgatgttt 12806443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 339
Target Start/End: Complemental strand, 17024593 - 17024523
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattca 339  Q
    |||| |||||||||||| ||  |||||||| | |||||||||||||||||  || ||||||| ||||||||    
T  17024593 ttttattctcttaaaccctacctaatcattcactataaatagagacccttacactcattattattcattca 17024523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 13275672 - 13275631
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaa 47  Q
    ||||||||||||||||||  ||| ||||||||||||||||||    
T  13275672 tgaagatcaatggttctttgaagttttttgaagacaatacaa 13275631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 29437674 - 29437711
Alignment:
Q  35 gaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  29437674 gaagacaatacaaagtgaagaaacttcatttgaagttc 29437711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 25314912 - 25314884
Alignment:
Q  265 tcagttttcttctcttaaaccttaagtaa 293  Q
    |||||||||||||||||||||||||||||    
T  25314912 tcagttttcttctcttaaaccttaagtaa 25314884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 318
Target Start/End: Complemental strand, 47024472 - 47024368
Alignment:
Q  214 gggcataaattgcctgcaacttgtttttcaagctaaaacggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagaga 313  Q
    |||||||||||||||||| |||||||| ||| ||  | |||||  |||||   || ||||||||| || ||| ||| |||| ||||  ||||||||||||    
T  47024472 gggcataaattgcctgcagcttgttttccaaactggatcggtgcgaaaagtctagatttcttctcctacaccctaattaattattttctataaatagaga 47024373  T
Q  314 ccctt 318  Q
    |||||    
T  47024372 ccctt 47024368  T

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Target: scaffold0171 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 21577 - 21647
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagtt 71  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||  |||||||||||||    
T  21577 aagattgaagatcaatggttcttagaaggtttttaaagacaatacaaagttaagaatattcatttcaagtt 21647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 6377 - 6456
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttc 83  Q
    |||||||| ||||||||| || ||| |||||||||| |||||||||||||||||  ||| ||||||||| || |||||||    
T  6377 attgaagaccaatggttcctagaagatttttgaagaaaatacaaagtgaagaaaaatcaattcaagttcctaggagtttc 6456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0362 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0362
Description:

Target: scaffold0362; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 2 - 95
Target Start/End: Original strand, 7799 - 7892
Alignment:
Q  2 agattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaa 95  Q
    |||||||||  |||||||||||| |||||| ||||||||| |||||||| |||||| |||||||||||||| || |||||| || |||||||||    
T  7799 agattgaaggccaatggttcttagaaggttgttgaagacagtacaaagtcaagaaaattcatttcaagttcctaggagttttcagacggaagaa 7892  T

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Target: scaffold0190 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 11633 - 11564
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagt 70  Q
    ||||||||| ||||||| |||||| ||||| |||||||||||||||||||||||||| ||||||||||||    
T  11633 aagattgaatatcaatgattcttataaggtatttgaagacaatacaaagtgaagaaaattcatttcaagt 11564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 228118 - 228051
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  228118 attgaaga-caatggttcttagaaggtatttgaagacaatacaaagtgaagaaaattcatttcaagttc 228051  T

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Target: scaffold0650 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 5694 - 5607
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    ||||||||||||| ||||| ||| |||| ||||||||||||||||| |||| |||||||| ||| |||||| || |||||||||||||    
T  5694 tcaatggttcttagaaggtctttaaagaaaatacaaagtgaagaaaattcaattcaagtttgtaggagttttcagacggaagaacgat 5607  T

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Target: scaffold0282 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 22538 - 22451
Alignment:
Q  12 tcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||| || ||||||||| |||||||||||| ||||||||| |||||||||||||| || || |||||| | |||||||||||    
T  22538 tcaatggttcatagaaggttttttaagacaatacaaggtgaagaaaattcatttcaagttcctaggattttccagagggaagaacgat 22451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 26887 - 26809
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagttt 82  Q
    ||||||| ||||||||||||| || ||| ||||||||||||||||||||||||| ||| |||||||||| || ||||||    
T  26887 attgaagttcaatggttcttagaaagttcttgaagacaatacaaagtgaagaaaattcgtttcaagttcataggagttt 26809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 1978 - 2037
Alignment:
Q  13 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||    
T  1978 caatggttcttatatggtttttgaagacaatacaaagtaaagaaaattcatttcaagttc 2037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 8624 - 8546
Alignment:
Q  21 cttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||||||||||||||||||||||||||  ||||| || |||||||| ||||| || || ||| ||||||||||||||||    
T  8624 cttaaaaggtttttgaagacaatacaagatgaaggaaattcatttcgagttcctaggaattttcaaacggaagaacgat 8546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 11734 - 11636
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttcgtatgagtttccaaacggaagaacgat 99  Q
    |||| |||| || ||| ||||||| ||||||||||||| |||| |||  ||| |||| |||||||| ||||| || || |||||| |||||||||||||    
T  11734 aagaatgaatataaatagttcttagaaggtttttgaagtcaatgcaagatgacgaaagttcatttcgagttcctaggaatttccagacggaagaacgat 11636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 347
Target Start/End: Complemental strand, 8399 - 8321
Alignment:
Q  269 ttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagcta 347  Q
    |||||||||||| |||| |||||||| || |  |||||||||||||||||  | ||||| || |||||||| |||||||    
T  8399 ttttcttctctttaaccctaagtaataatatgctataaatagagacccttgcagacatttttattcattcagaaagcta 8321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 11445 - 11351
Alignment:
Q  253 ggtggtaaaagctcagttttcttctcttaaaccttaagtaatcatttaatataaatagagacccttttacacattatttttcattcataaagcta 347  Q
    ||||| |||||  ||||||| |||||||||| | |||||||| || |  |||||||||||||||||  ||| ||| || |||||||| |||||||    
T  11445 ggtgggaaaagtccagtttttttctcttaaatcctaagtaataatatgctataaatagagacccttgcacatatttttattcattcagaaagcta 11351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 1988 - 2058
Alignment:
Q  1 aagattgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||| |||||||| ||| ||| ||| |||||| ||||||||||||||||| || |||||||||||    
T  1988 aagattgaaga-caatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttc 2058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 2684 - 2750
Alignment:
Q  6 tgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    ||||||||||||||||||| |||   ||||||||||||||| ||||||||||  |||||||| ||||    
T  2684 tgaagatcaatggttcttataagacatttgaagacaatacagagtgaagaaaactcatttcatgttc 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 447158 - 447211
Alignment:
Q  4 attgaagatcaatggttcttaaaaggtttttgaagacaatacaaagtgaagaaa 57  Q
    ||||||||||||  |||||||| |||||  ||||||||||||||||||||||||    
T  447158 attgaagatcaaaagttcttaacaggttactgaagacaatacaaagtgaagaaa 447211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Original strand, 12435 - 12494
Alignment:
Q  13 caatggttcttaaaaggtttttgaagacaatacaaagtgaagaaatttcatttcaagttc 72  Q
    |||||||| ||| ||| ||| |||||| ||||||||||||||||| || |||||||||||    
T  12435 caatggttgttagaagttttatgaagaaaatacaaagtgaagaaaatttatttcaagttc 12494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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