View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19802_high_2 (Length: 439)
Name: NF19802_high_2
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19802_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 2 - 424
Target Start/End: Complemental strand, 42170605 - 42170182
Alignment:
| Q |
2 |
ataaatttgtgcttgaaacgttgataacttgatatgctttcaacttctggaaatctcaactctaatttattttttaaattaggtctttgacctctattac |
101 |
Q |
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| T |
42170605 |
ataaatttgtgcttgaaacgttgataactttatatgctttcaacttctggaaatctcaactctaatttattttttaaattaggtctttgacctctattac |
42170506 |
T |
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| Q |
102 |
atgctctaagggatttaggtctctttttattaatactaaactaatccttgaatttttcaccttgaatgaattgggctctttggacgactctagaaatcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42170505 |
atgctctaagggatttaggtctctttttattaatactaaactaatccttgaatttttcaccttgaatgaattgggctctttggacgactctagaaatcaa |
42170406 |
T |
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| Q |
202 |
atttaga-nnnnnnnnnnaaggtaagagttgttaattttaattgttgtcaaatgatcattctaatttagattttgtatcctcatttattcttttgacgga |
300 |
Q |
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| T |
42170405 |
atttagatttttttttttaaggtaagagttgttaattttaattgttgtcaaatgatcattctaatttagattttgtatcctcatttattcttttgacgga |
42170306 |
T |
|
| Q |
301 |
ttgcattctcaagtatacattttgattgcagaaattagaccatcatctcagtcaaaaataatgttcttctactaatgagaagaagactttgccatttcat |
400 |
Q |
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| T |
42170305 |
ttgcattctcaagtatacattttgattgccgaaattagaccatcatctcagtcaaaaataatgttcttctactaatgagaagaagactttgccatttcat |
42170206 |
T |
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| Q |
401 |
tatgtcattgcattggtacaaatt |
424 |
Q |
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| T |
42170205 |
tatgtcattacattggtacaaatt |
42170182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 11873485 - 11873552
Alignment:
| Q |
235 |
attttaattgttgtcaaatgatcattctaatttagattttgtatcctcatttattcttttgacggatt |
302 |
Q |
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|||||||||| |||| ||||||||||||| ||||||||||||||||| |||||| ||||||| |||| |
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| T |
11873485 |
attttaattgatgtctaatgatcattctacgttagattttgtatcctcgtttatttttttgacagatt |
11873552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 381 - 424
Target Start/End: Original strand, 11875346 - 11875389
Alignment:
| Q |
381 |
agaagactttgccatttcattatgtcattgcattggtacaaatt |
424 |
Q |
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| T |
11875346 |
agaagactttgccatttcattatgtcattatattggtacaaatt |
11875389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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