View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19802_high_8 (Length: 231)

Name: NF19802_high_8
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19802_high_8
NF19802_high_8
[»] chr5 (11 HSPs)
chr5 (18-214)||(39480277-39480473)
chr5 (39-214)||(39458384-39458559)
chr5 (39-172)||(39486405-39486538)
chr5 (50-165)||(39454592-39454707)
chr5 (50-166)||(39450952-39451068)
chr5 (56-165)||(39464641-39464750)
chr5 (50-191)||(39475433-39475574)
chr5 (50-171)||(39471983-39472104)
chr5 (44-168)||(43312608-43312732)
chr5 (39-165)||(39470847-39470973)
chr5 (40-171)||(39460197-39460328)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 39480473 - 39480277
Alignment:
Q  18 acctttggattaaatataaagatttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactag 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39480473 acctttggattagatataaagatttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactag 39480374  T
Q  118 atgaccaacaccaggtgaagtgataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttct 214  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39480373 atgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttct 39480277  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 39458384 - 39458559
Alignment:
Q  39 atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagt 138  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||     
T  39458384 atttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaaga 39458483  T
Q  139 gataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttct 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  39458484 gataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttctcaattgttct 39458559  T

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Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 39486538 - 39486405
Alignment:
Q  39 atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagt 138  Q
    |||| |||||||| |  |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||     
T  39486538 atttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagg 39486439  T
Q  139 gataatcaccacttctgctttcttcatcctggat 172  Q
    |||||||||||||||||||||||||||| |||||    
T  39486438 gataatcaccacttctgctttcttcatcttggat 39486405  T

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Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 39454707 - 39454592
Alignment:
Q  50 aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca 149  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||||| |||| ||||| |||||    
T  39454707 aaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacacca 39454608  T
Q  150 cttctgctttcttcat 165  Q
    ||||||||||||||||    
T  39454607 cttctgctttcttcat 39454592  T

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Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 39451068 - 39450952
Alignment:
Q  50 aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca 149  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||  ||| ||||| |||||    
T  39451068 aaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacacca 39450969  T
Q  150 cttctgctttcttcatc 166  Q
    |||||||||||||||||    
T  39450968 cttctgctttcttcatc 39450952  T

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Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 39464641 - 39464750
Alignment:
Q  56 gttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcaccacttctg 155  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||  |||||||||||||| ||| | ||  ||| ||||| ||| |||||||    
T  39464641 gttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctg 39464740  T
Q  156 ctttcttcat 165  Q
    ||||||||||    
T  39464741 ctttcttcat 39464750  T

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Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 39475574 - 39475433
Alignment:
Q  50 aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca 149  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| | || ||||| ||||||| |||||| |  | ||| ||  ||| ||||| |||||    
T  39475574 aaaacagttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacacca 39475475  T
Q  150 cttctgctttcttcatcctggatatgcacttactcagtgtga 191  Q
    ||||||||||||||||| ||||||| |||||  |||||||||    
T  39475474 cttctgctttcttcatcttggatatacacttgatcagtgtga 39475433  T

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Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 39472104 - 39471983
Alignment:
Q  50 aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca 149  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || || || |  ||||||| ||||||  || | ||  ||| || || |||||    
T  39472104 aaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacacca 39472005  T
Q  150 cttctgctttcttcatcctgga 171  Q
    ||||||||||||||||| ||||    
T  39472004 cttctgctttcttcatcttgga 39471983  T

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Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 43312608 - 43312732
Alignment:
Q  44 atgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataa 143  Q
    |||||||| || ||||  ||||||||||||||||||||||| |||||||| || || ||||||||||| |||| ||| || ||||| || |||| |||||    
T  43312608 atgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa 43312707  T
Q  144 tcaccacttctgctttcttcatcct 168  Q
     ||||||||||  ||||||||||||    
T  43312708 acaccacttctagtttcttcatcct 43312732  T

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Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 39470847 - 39470973
Alignment:
Q  39 atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagt 138  Q
    |||||||||| || |||||||||| ||| ||||||||| |||||||||||||||| ||||| || | ||  |||||||||||||| ||| | ||  |||     
T  39470847 atttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagg 39470946  T
Q  139 gataatcaccacttctgctttcttcat 165  Q
    ||||| |||||||||  ||||||||||    
T  39470947 gataaacaccacttccactttcttcat 39470973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 39460328 - 39460197
Alignment:
Q  40 tttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtg 139  Q
    ||||||||| |  ||||| |||||||| || |||||||||||| |||||||||| ||||| |||||||||||| ||||||| |    ||| ||  ||| |    
T  39460328 tttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaaggg 39460229  T
Q  140 ataatcaccacttctgctttcttcatcctgga 171  Q
    |||| ||| |||||||||||||||||| ||||    
T  39460228 ataaacacaacttctgctttcttcatcttgga 39460197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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