View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19802_low_11 (Length: 248)

Name: NF19802_low_11
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19802_low_11
NF19802_low_11
[»] chr4 (6 HSPs)
chr4 (135-231)||(51246621-51246717)
chr4 (135-231)||(28787959-28788055)
chr4 (135-218)||(17525507-17525590)
chr4 (146-212)||(28787018-28787084)
chr4 (135-231)||(24856236-24856332)
chr4 (141-231)||(24853351-24853441)
[»] scaffold0406 (1 HSPs)
scaffold0406 (135-231)||(6279-6375)
[»] chr5 (5 HSPs)
chr5 (135-212)||(5046447-5046524)
chr5 (135-212)||(5047218-5047295)
chr5 (135-212)||(5047989-5048066)
chr5 (177-208)||(5664846-5664877)
chr5 (143-203)||(5663780-5663840)
[»] chr7 (3 HSPs)
chr7 (135-231)||(22622378-22622474)
chr7 (1-35)||(19937857-19937891)
chr7 (1-35)||(19968996-19969030)
[»] chr3 (3 HSPs)
chr3 (146-212)||(12738201-12738267)
chr3 (135-212)||(12739341-12739418)
chr3 (135-180)||(15023058-15023103)
[»] chr2 (1 HSPs)
chr2 (136-212)||(20978863-20978940)
[»] chr8 (1 HSPs)
chr8 (144-231)||(1275204-1275291)
[»] chr1 (1 HSPs)
chr1 (135-208)||(22056567-22056639)


Alignment Details
Target: chr4 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 51246621 - 51246717
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||| |||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51246621 ctagattattctagttctagaaacatctacaagcacctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtcaataat 51246717  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 28787959 - 28788055
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||| |||||||||||||||||||| | ||  ||||||||||||||| |||||||||||||||||||||||||||||  |||| ||| ||||||||    
T  28787959 ctagattattctagttctagaaacatcttcaaacacctataaatagacatatatgggtgcaattgtattcaagcctttaagatgcaatgtcaataat 28788055  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 135 - 218
Target Start/End: Complemental strand, 17525590 - 17525507
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatg 218  Q
    ||||| |||||||||||||||||||| |||| || | |||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  17525590 ctagattattctagttctagaaacatctacaagcgcttataaatagacttatatgtgtgaaattgtattcaagcctttgagatg 17525507  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 28787018 - 28787084
Alignment:
Q  146 tagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    ||||||||||||||| | || |||||||||||||||| ||||| |||||||||||||||||||||||    
T  28787018 tagttctagaaacatcttcaagcacctataaatagacatatattggtgcaattgtattcaagccttt 28787084  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 24856236 - 24856332
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||| |||||||||||||||||||||| |   |||||||||||||||||||  || ||||||||||||| |||||||  |||| ||| ||||||||    
T  24856236 ctagattattctagttctagaaacattttctaacacctataaatagacttattaggatgcaattgtattccagcctttaagatgcaatgtcaataat 24856332  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 24853351 - 24853441
Alignment:
Q  141 tattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||||||||||| |||||| | |   ||||||||||||||||||| ||| |||||||||||||||||||||  |||| ||| ||||||||    
T  24853351 tattctagttctaaaaacatcttctaacacctataaatagacttatttggatgcaattgtattcaagcctttaagatgcaatgtcaataat 24853441  T

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Target: scaffold0406 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 135 - 231
Target Start/End: Original strand, 6279 - 6375
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||| |||||||||||||||||||  | || ||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||    
T  6279 ctagattattctagttctagaaacagcttcaagcacctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtcaataat 6375  T

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Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 5046447 - 5046524
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  5046447 ctagattattctagttttagaaacatctacaagcacctataaatagacttatatgagtgcaattgtattcaagccttt 5046524  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 5047218 - 5047295
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    ||||| |||||||||| ||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  5047218 ctagattattctagttttagaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagccttt 5047295  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 5047989 - 5048066
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    ||||| |||||||||| || |||||| |||| ||||||||||||| ||||||||| ||||||||||||||||||||||    
T  5047989 ctagattattctagttttaaaaacatctacaagcacctataaatatacttatatgagtgcaattgtattcaagccttt 5048066  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 208
Target Start/End: Complemental strand, 5664877 - 5664846
Alignment:
Q  177 atagacttatatgggtgcaattgtattcaagc 208  Q
    ||||||||||||||||||||||||||||||||    
T  5664877 atagacttatatgggtgcaattgtattcaagc 5664846  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 5663840 - 5663780
Alignment:
Q  143 ttctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtatt 203  Q
    |||||||| ||||||||| | ||  ||| |||||||||| |||||||||||| ||||||||    
T  5663840 ttctagttttagaaacatcttcaatcacttataaatagaattatatgggtgcgattgtatt 5663780  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 231
Target Start/End: Complemental strand, 22622474 - 22622378
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||| ||||||| |||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||  || ||||||||    
T  22622474 ctagattattctaattctagaaacatcttcaggcacttataaataggcttatatgggtgcaattgtattcaagcctttgagatgccatgtcaataat 22622378  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19937857 - 19937891
Alignment:
Q  1 cttggtaaacattgtatgctagttgttatttgatc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19937857 cttggtaaacattgtatgctagttgttatttgatc 19937891  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 19968996 - 19969030
Alignment:
Q  1 cttggtaaacattgtatgctagttgttatttgatc 35  Q
    |||||||||||||||||||||||||||||||||||    
T  19968996 cttggtaaacattgtatgctagttgttatttgatc 19969030  T

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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 12738201 - 12738267
Alignment:
Q  146 tagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    ||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||    
T  12738201 tagttctagaaacatctacaagcacctataaataaacttatttgggtgcaattgtattcaagccttt 12738267  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 12739341 - 12739418
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    ||||| |||| ||||||||||||||| |||| ||| ||||||||||| |||| ||| |||||||||||||||||||||    
T  12739341 ctagattattttagttctagaaacatctacaagcatctataaatagaattatttggatgcaattgtattcaagccttt 12739418  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 180
Target Start/End: Original strand, 15023058 - 15023103
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatag 180  Q
    ||||| |||| ||||||||||||||| |||| ||||||||||||||    
T  15023058 ctagattattttagttctagaaacatctacaagcacctataaatag 15023103  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 20978940 - 20978863
Alignment:
Q  136 tagaatattctagttctagaaacatttacag-gcacctataaatagacttatatgggtgcaattgtattcaagccttt 212  Q
    |||| |||||||||||||||||||| ||||  | ||||||||||| |||||||||||||| ||| |||||||||||||    
T  20978940 tagattattctagttctagaaacatctacaaagtacctataaataaacttatatgggtgccattatattcaagccttt 20978863  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 231
Target Start/End: Complemental strand, 1275291 - 1275204
Alignment:
Q  144 tctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagcctttgggatgtaatatcaataat 231  Q
    ||||||||||||||||  | || |||||||||| || |  ||||||||||||||||||||||| | |||  |||| ||| ||||||||    
T  1275291 tctagttctagaaacaccttcaagcacctataagtataggtatatgggtgcaattgtattcaaacgtttaagatgcaatgtcaataat 1275204  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 22056639 - 22056567
Alignment:
Q  135 ctagaatattctagttctagaaacatttacaggcacctataaatagacttatatgggtgcaattgtattcaagc 208  Q
    ||||| ||||||||||||||||| || | || ||||||||||| ||||||| |  |||||||||| ||||||||    
T  22056639 ctagattattctagttctagaaatatcttcaagcacctataaagagactta-aaaggtgcaattgcattcaagc 22056567  T

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