View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19802_low_12 (Length: 231)
Name: NF19802_low_12
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19802_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 39480473 - 39480277
Alignment:
| Q |
18 |
acctttggattaaatataaagatttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactag |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480473 |
acctttggattagatataaagatttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactag |
39480374 |
T |
|
| Q |
118 |
atgaccaacaccaggtgaagtgataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttct |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39480373 |
atgaccaacaccaggtgaagggataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttct |
39480277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 39 - 214
Target Start/End: Original strand, 39458384 - 39458559
Alignment:
| Q |
39 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagt |
138 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39458384 |
atttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaaga |
39458483 |
T |
|
| Q |
139 |
gataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttttctattgttct |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
39458484 |
gataatcaccacttctgctttcttcatcctggatatgcacttactcagtgtgagtgactgtgttctcaattgttct |
39458559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 39 - 172
Target Start/End: Complemental strand, 39486538 - 39486405
Alignment:
| Q |
39 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagt |
138 |
Q |
| |
|
|||| |||||||| | |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39486538 |
atttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaacaccaggtgaagg |
39486439 |
T |
|
| Q |
139 |
gataatcaccacttctgctttcttcatcctggat |
172 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
39486438 |
gataatcaccacttctgctttcttcatcttggat |
39486405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 165
Target Start/End: Complemental strand, 39454707 - 39454592
Alignment:
| Q |
50 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||||||||| |||| ||||| ||||| |
|
|
| T |
39454707 |
aaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaagggataaacacca |
39454608 |
T |
|
| Q |
150 |
cttctgctttcttcat |
165 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
39454607 |
cttctgctttcttcat |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 50 - 166
Target Start/End: Complemental strand, 39451068 - 39450952
Alignment:
| Q |
50 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca |
149 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||| ||||| |
|
|
| T |
39451068 |
aaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaagggataaacacca |
39450969 |
T |
|
| Q |
150 |
cttctgctttcttcatc |
166 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
39450968 |
cttctgctttcttcatc |
39450952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 165
Target Start/End: Original strand, 39464641 - 39464750
Alignment:
| Q |
56 |
gttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcaccacttctg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||| ||| | || ||| ||||| ||| ||||||| |
|
|
| T |
39464641 |
gttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaacactacttctg |
39464740 |
T |
|
| Q |
156 |
ctttcttcat |
165 |
Q |
| |
|
|||||||||| |
|
|
| T |
39464741 |
ctttcttcat |
39464750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 50 - 191
Target Start/End: Complemental strand, 39475574 - 39475433
Alignment:
| Q |
50 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca |
149 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||| | || ||||| ||||||| |||||| | | ||| || ||| ||||| ||||| |
|
|
| T |
39475574 |
aaaacagttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaagggataaacacca |
39475475 |
T |
|
| Q |
150 |
cttctgctttcttcatcctggatatgcacttactcagtgtga |
191 |
Q |
| |
|
||||||||||||||||| ||||||| ||||| ||||||||| |
|
|
| T |
39475474 |
cttctgctttcttcatcttggatatacacttgatcagtgtga |
39475433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 39472104 - 39471983
Alignment:
| Q |
50 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataatcacca |
149 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || || || | ||||||| |||||| || | || ||| || || ||||| |
|
|
| T |
39472104 |
aaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaagggacaaacacca |
39472005 |
T |
|
| Q |
150 |
cttctgctttcttcatcctgga |
171 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
39472004 |
cttctgctttcttcatcttgga |
39471983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 168
Target Start/End: Original strand, 43312608 - 43312732
Alignment:
| Q |
44 |
atgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtgataa |
143 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||| |||||||| || || ||||||||||| |||| ||| || ||||| || |||| ||||| |
|
|
| T |
43312608 |
atgaccaagacggttacacggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataa |
43312707 |
T |
|
| Q |
144 |
tcaccacttctgctttcttcatcct |
168 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
43312708 |
acaccacttctagtttcttcatcct |
43312732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 39 - 165
Target Start/End: Original strand, 39470847 - 39470973
Alignment:
| Q |
39 |
atttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagt |
138 |
Q |
| |
|
|||||||||| || |||||||||| ||| ||||||||| |||||||||||||||| ||||| || | || |||||||||||||| ||| | || ||| |
|
|
| T |
39470847 |
atttcatgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagg |
39470946 |
T |
|
| Q |
139 |
gataatcaccacttctgctttcttcat |
165 |
Q |
| |
|
||||| ||||||||| |||||||||| |
|
|
| T |
39470947 |
gataaacaccacttccactttcttcat |
39470973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 171
Target Start/End: Complemental strand, 39460328 - 39460197
Alignment:
| Q |
40 |
tttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaagtg |
139 |
Q |
| |
|
||||||||| | ||||| |||||||| || |||||||||||| |||||||||| ||||| |||||||||||| ||||||| | ||| || ||| | |
|
|
| T |
39460328 |
tttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgggaaaaggg |
39460229 |
T |
|
| Q |
140 |
ataatcaccacttctgctttcttcatcctgga |
171 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||| |
|
|
| T |
39460228 |
ataaacacaacttctgctttcttcatcttgga |
39460197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University