View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19802_low_5 (Length: 300)
Name: NF19802_low_5
Description: NF19802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19802_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 2411057 - 2410780
Alignment:
| Q |
1 |
ataccgtttcttttattctcttactaccagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttac |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2411057 |
ataccgtttcttttattctcttac---cagcctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttac |
2410961 |
T |
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| Q |
101 |
aaacaccaaaacaaaaacaacactgtgttactgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagagg |
200 |
Q |
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|| |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410960 |
aa-caccaaaacaaaaacaacactgtgttactgtaacgctctt--------aacaaaataatgtcagaaaatcgattcttgcctataattgaagaagagg |
2410870 |
T |
|
| Q |
201 |
aaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgatgatg |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2410869 |
aaatagaaattgacgacgatttctacgagaagatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgatgatg |
2410780 |
T |
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